Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00950
         (691 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058254-1|AAL13483.1|  516|Drosophila melanogaster GH01464p pro...    44   3e-04
AE014296-399|AAF47600.1|  516|Drosophila melanogaster CG1140-PA,...    44   3e-04
AE014296-398|AAN11508.1|  502|Drosophila melanogaster CG1140-PB,...    44   3e-04

>AY058254-1|AAL13483.1|  516|Drosophila melanogaster GH01464p
           protein.
          Length = 516

 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +2

Query: 497 PKN*VVGTMEHTAKNGSHKILPECTLPLTGKTVL 598
           P   V+ TMEH A++GS KIL  C+LPLTGK V+
Sbjct: 429 PGTKVIITMEHNARDGSPKILDTCSLPLTGKGVI 462



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 450 GKMVKGMGGAMDLVSAPRTK*WVQWNTPPRMDRTKFSQSAPYRSQEK-LC*YDHYRKMRL 626
           GK+VKGMGGAMDLV+AP TK  +      R    K   +       K +       K   
Sbjct: 413 GKLVKGMGGAMDLVAAPGTKVIITMEHNARDGSPKILDTCSLPLTGKGVIDMIISEKAVF 472

Query: 627 RSRQRKGLILTELAEGVKVED 689
              +  GL L E+AEG  V+D
Sbjct: 473 TVEKGVGLTLIEVAEGYTVDD 493


>AE014296-399|AAF47600.1|  516|Drosophila melanogaster CG1140-PA,
           isoform A protein.
          Length = 516

 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +2

Query: 497 PKN*VVGTMEHTAKNGSHKILPECTLPLTGKTVL 598
           P   V+ TMEH A++GS KIL  C+LPLTGK V+
Sbjct: 429 PGTKVIITMEHNARDGSPKILDTCSLPLTGKGVI 462



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 450 GKMVKGMGGAMDLVSAPRTK*WVQWNTPPRMDRTKFSQSAPYRSQEK-LC*YDHYRKMRL 626
           GK+VKGMGGAMDLV+AP TK  +      R    K   +       K +       K   
Sbjct: 413 GKLVKGMGGAMDLVAAPGTKVIITMEHNARDGSPKILDTCSLPLTGKGVIDMIISEKAVF 472

Query: 627 RSRQRKGLILTELAEGVKVED 689
              +  GL L E+AEG  V+D
Sbjct: 473 TVEKGVGLTLIEVAEGYTVDD 493


>AE014296-398|AAN11508.1|  502|Drosophila melanogaster CG1140-PB,
           isoform B protein.
          Length = 502

 Score = 43.6 bits (98), Expect = 3e-04
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +2

Query: 497 PKN*VVGTMEHTAKNGSHKILPECTLPLTGKTVL 598
           P   V+ TMEH A++GS KIL  C+LPLTGK V+
Sbjct: 415 PGTKVIITMEHNARDGSPKILDTCSLPLTGKGVI 448



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 450 GKMVKGMGGAMDLVSAPRTK*WVQWNTPPRMDRTKFSQSAPYRSQEK-LC*YDHYRKMRL 626
           GK+VKGMGGAMDLV+AP TK  +      R    K   +       K +       K   
Sbjct: 399 GKLVKGMGGAMDLVAAPGTKVIITMEHNARDGSPKILDTCSLPLTGKGVIDMIISEKAVF 458

Query: 627 RSRQRKGLILTELAEGVKVED 689
              +  GL L E+AEG  V+D
Sbjct: 459 TVEKGVGLTLIEVAEGYTVDD 479


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,211,082
Number of Sequences: 53049
Number of extensions: 602072
Number of successful extensions: 1021
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)