Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00950
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical pr...    42   5e-04
Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical p...    27   9.6  

>Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical
           protein C05C10.3 protein.
          Length = 521

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +2

Query: 509 VVGTMEHTAKNGSHKILPECTLPLTGKTVL 598
           V+  MEH +KNG  KIL  C LPLTGK V+
Sbjct: 435 VIVVMEHVSKNGEPKILEHCELPLTGKGVI 464



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +3

Query: 450 GKMVKGMGGAMDLVSAP 500
           GK+VKGMGGAMDLVSAP
Sbjct: 415 GKLVKGMGGAMDLVSAP 431


>Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical
           protein F25H2.13 protein.
          Length = 994

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 624 DAFFGNDHINTVFPVSGKVHSGRILCD 544
           D  FG+  + +V P+SGK   G IL +
Sbjct: 340 DKLFGSSQLKSVPPLSGKASDGEILLE 366


>Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical
           protein F25H2.13 protein.
          Length = 994

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 624 DAFFGNDHINTVFPVSGKVHSGRILCD 544
           D  FG+  + +V P+SGK   G IL +
Sbjct: 340 DKLFGSSQLKSVPPLSGKASDGEILLE 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,583,061
Number of Sequences: 27780
Number of extensions: 331440
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)