Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00950
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61910.3 68418.m07772 expressed protein                             29   3.8  
At5g61910.2 68418.m07771 expressed protein                             29   3.8  
At5g61910.1 68418.m07770 expressed protein                             29   3.8  

>At5g61910.3 68418.m07772 expressed protein
          Length = 742

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 162 LNVTTSLENTDGMV*FFNYRNYRCYKQLTSHSLFTELSYLTKTCTPQSEVTPH 4
           +N     ENT     + NY+  +  ++L+ H + + LS      +P+ ++ PH
Sbjct: 148 MNCLPLTENTFKSAIYENYKGSKFKQELSPHQVMSLLSLFRSFTSPELDLLPH 200


>At5g61910.2 68418.m07771 expressed protein
          Length = 738

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 162 LNVTTSLENTDGMV*FFNYRNYRCYKQLTSHSLFTELSYLTKTCTPQSEVTPH 4
           +N     ENT     + NY+  +  ++L+ H + + LS      +P+ ++ PH
Sbjct: 144 MNCLPLTENTFKSAIYENYKGSKFKQELSPHQVMSLLSLFRSFTSPELDLLPH 196


>At5g61910.1 68418.m07770 expressed protein
          Length = 738

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 162 LNVTTSLENTDGMV*FFNYRNYRCYKQLTSHSLFTELSYLTKTCTPQSEVTPH 4
           +N     ENT     + NY+  +  ++L+ H + + LS      +P+ ++ PH
Sbjct: 144 MNCLPLTENTFKSAIYENYKGSKFKQELSPHQVMSLLSLFRSFTSPELDLLPH 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,921
Number of Sequences: 28952
Number of extensions: 295763
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)