Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00949
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 116 1e-26
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 106 1e-23
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 31 0.77
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 29 2.3
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 29 2.3
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 29 2.3
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 29 2.3
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 4.1
AC006830-5|AAK68612.2| 569|Caenorhabditis elegans Hypothetical ... 29 4.1
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 28 7.1
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 116 bits (280), Expect = 1e-26
Identities = 53/72 (73%), Positives = 59/72 (81%)
Frame = +1
Query: 73 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 252
+D HF TGDSGA+ATFP QCSALRKN VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
Query: 253 ISMVKSMKISVP 288
I K ++ P
Sbjct: 67 IFTSKKLEDICP 78
Score = 84.6 bits (200), Expect = 6e-17
Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 FNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGT 431
F KK EDICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK+PD +LG
Sbjct: 68 FTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQ 126
Query: 432 QLRTDFDSGK-ELLCTVLKSCGEECVM 509
Q+R ++ + +L V+ + GEE ++
Sbjct: 127 QIRDAYEKDEGSVLVQVVSAIGEEAIL 153
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 106 bits (255), Expect = 1e-23
Identities = 47/72 (65%), Positives = 58/72 (80%)
Frame = +1
Query: 73 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 252
++ F++ +SGA+ATFP QCSALRKN VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100
Query: 253 ISMVKSMKISVP 288
I K ++ P
Sbjct: 101 IFTTKKLEDICP 112
Score = 87.0 bits (206), Expect = 1e-17
Identities = 43/90 (47%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Frame = +3
Query: 255 FNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGT 431
F KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK+P+GDLG
Sbjct: 102 FTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLGN 160
Query: 432 QLRTDFDSGK-ELLCTVLKSCGEECVMPSK 518
+R + + +L V+ +CGEE ++ K
Sbjct: 161 TIREALEKDEGSVLVQVVAACGEEAILGYK 190
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 31.1 bits (67), Expect = 0.77
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +3
Query: 297 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 467
N +P +K++ Y L ++ GY+ + GDL+ KI D LR D ++ G+
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629
Query: 468 LCTVLKSCGEEC 503
++K CG++C
Sbjct: 630 HAALVKECGDKC 641
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +2
Query: 38 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 154
V+K T + ++S T T TPGP P +PC+ P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +2
Query: 38 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 154
V+K T + ++S T T TPGP P +PC+ P V T+
Sbjct: 13 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +2
Query: 38 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 154
V+K T + ++S T T TPGP P +PC+ P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +2
Query: 38 VVKFKTQQWVTSKTH-----TLRPETPGPQPPSPCNVRPCVKTV 154
V+K T + ++S T T TPGP P +PC+ P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 68 TSKTHTLRPETPGPQPPSPCNVRP 139
T K T R E+P P PP P RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381
>AC006830-5|AAK68612.2| 569|Caenorhabditis elegans Hypothetical
protein ZK105.5 protein.
Length = 569
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +1
Query: 379 TTVTCVRTSKSRMVTS----AHSCVLTSTAARNCCAPC*NPAVRSASCRQSKHSSRQINQ 546
T TC RT + + S V T T+ +C P A S CRQS + +
Sbjct: 137 TKYTCTRTIIDHITLNYDIYMESIVATPTSETSCKDPY--YAFESCRCRQSYDITENLVN 194
Query: 547 LSIYRVNKLLIFYNQQLLHKCK 612
+ K+ I+ ++++++CK
Sbjct: 195 KYKWADKKMSIYKQEEVMNQCK 216
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 357 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 473
GYL GD ++++K+ +G Q+ +D D K C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 155 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 63
+P +R+++C G + E E ++KC +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = +3
Query: 273 EDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 407
ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 81 EDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,012,453
Number of Sequences: 27780
Number of extensions: 386048
Number of successful extensions: 1131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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