Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00948
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   2.2  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    26   6.9  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = -3

Query: 699 DLLILNCLSISTKDLFPISLRINQIFTNKFKKYCYNYIDNPTNLYLFILRS 547
           DLL +   S+++   FP++LRI++I    F+ Y  +   +   ++ FI+ S
Sbjct: 245 DLLPIITASLASMSDFPVALRISRILNIIFQHYVTSLTLDIEVIFSFIISS 295


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 639 RINQIFTNKFKKYCYNYIDNPTNLYLFILRSFPFHV 532
           R  Q     F+ Y   Y  +P NL L +LRS PFH+
Sbjct: 262 RAYQEVQETFEYYVQTY--DPNNL-LMLLRSHPFHI 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,526
Number of Sequences: 5004
Number of extensions: 60360
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)