Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00948
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0806 - 7791882-7792219,7793553-7793649,7796593-7796733           29   3.1  
02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712...    29   5.4  
11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480     28   7.2  
07_03_0430 + 18150006-18151412                                         28   7.2  

>08_01_0806 - 7791882-7792219,7793553-7793649,7796593-7796733
          Length = 191

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 681 CLSISTKDLFPISLRINQIFTNKFKKYCYNYIDNPTNLYLFILRSFPFHVFSS 523
           CL I  K +  I L  +Q   +  K+ C+++I NP  L   +  +  +H F S
Sbjct: 122 CLDIDVKSVMVILLLADQHQCDMLKQACFSFIANPNTLET-VTGTPEYHQFKS 173


>02_02_0140 +
           7125914-7126264,7126426-7126677,7126766-7126861,
           7127013-7127187,7127283-7127363,7127451-7127548,
           7127828-7127920,7128607-7128678,7128998-7129117,
           7129210-7129260,7130026-7130211,7130355-7130411
          Length = 543

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 255 YKLAAIIMHIQSCFMNFQHSTIKLQKMEDFATNIKLILSVE 133
           Y +  +  H + C   F+H  + L     + T +K++ SVE
Sbjct: 414 YSIPLVAYHEEQCLTLFEHPLVDLLHTIHYETKVKVVPSVE 454


>11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480
          Length = 910

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 729 IDLVTCLCKIDLLILNCLSISTKDLFP 649
           I LV  LC+  L +LNC S++T   FP
Sbjct: 784 IRLVLRLCRSSLKLLNCPSLATVSQFP 810


>07_03_0430 + 18150006-18151412
          Length = 468

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 756 DIFVHLEIFIDLVTCLCKIDLLILN-CLSISTKDLFPISLRINQIF 622
           D+   L++ +DL T  CK   +ILN   S+    L  I+ R+  +F
Sbjct: 195 DVHPKLQMLVDLTTGSCKARAVILNTAASLEAPALAHIAPRVRDVF 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,669,443
Number of Sequences: 37544
Number of extensions: 310551
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)