Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00948
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)                   30   1.8  
SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)                29   5.5  
SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                28   7.3  
SB_55266| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
          Length = 841

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 618 NKFKKYCYNYIDNPTNLYLFILRSFPFHVFSSQLTPFRCYLYLSRPQY 475
           NK++K+C  + D P NL + I  + P+   SS L P+  +L    P++
Sbjct: 449 NKYQKFCNTHSDAPPNLRIGIAGTEPY--ISSILRPYVEHLSSKPPEW 494


>SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)
          Length = 567

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -3

Query: 753 IFVHLEIFIDLVTCLCKIDLLILNCLSISTKDLFPISLRINQIFTNKFKK 604
           IFV L+ F +   C   +++ I   L  +  DL  ISLR++  F+ +F K
Sbjct: 391 IFVVLQAFKEWTLCFEAMEMRIRIKLQKTDSDLNVISLRLDTEFSQQFAK 440


>SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 409

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 597 YN-YIDNPTNLYLFILRSFPFHVFSSQLTPFRCYLYLSRPQYS 472
           YN YI   +  Y++I+ + P+H++    +P+  Y   + P ++
Sbjct: 315 YNIYIIYTSPYYIYIIYASPYHIYIVYSSPYHTYTIYASPYHN 357


>SB_55266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 190 NSRMLKIHKTTLNMHDN---SC*LIKIAFQINFLW 285
           N+RM+K H TT   H +   +C +IKI   IN  W
Sbjct: 416 NTRMVKFHLTTARRHISYVFTCLVIKIRQPINCEW 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,071,206
Number of Sequences: 59808
Number of extensions: 386745
Number of successful extensions: 621
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)