Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00948
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    31   0.91 
AF022984-6|AAB69956.2|  357|Caenorhabditis elegans Serpentine re...    29   3.7  

>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 24/80 (30%), Positives = 42/80 (52%)
 Frame = -3

Query: 759 LDIFVHLEIFIDLVTCLCKIDLLILNCLSISTKDLFPISLRINQIFTNKFKKYCYNYIDN 580
           LDI   ++ F   ++ L  I  +  +CL+IS+ ++ P S    Q  ++  +K     I N
Sbjct: 334 LDIISRIKTFRTFLSELNTIKYI--DCLNISSLEM-PYSFAEIQSLSSTIEK-----IPN 385

Query: 579 PTNLYLFILRSFPFHVFSSQ 520
           PT   + IL SFP+ V+ ++
Sbjct: 386 PTRKVMKILESFPYDVYEAK 405


>AF022984-6|AAB69956.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein109 protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
 Frame = -3

Query: 732 FIDLVTCLCKIDLLILNCLS----ISTKDLFPISLRINQIFTNKFKKYCYNYIDNPTNLY 565
           FI +    C  +L+   CL     +  +D+F  S        NK  KY  N    PT+  
Sbjct: 148 FILMTLVFCTSNLIQSMCLYSIQIVEKRDIFLFSNCAEHQDINKVYKYTINLRPIPTDNK 207

Query: 564 LFILRSFPF------HVFSSQLTPFRCYLYLSRPQYSQKQQ 460
           + ++R++ F      H   SQ  P    L L + Q  +K +
Sbjct: 208 MLLIRTYIFLDVIFSHFLPSQAFPILTVLLLRKIQKMEKSR 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,686,411
Number of Sequences: 27780
Number of extensions: 320619
Number of successful extensions: 744
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)