Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00948
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    23   2.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.1  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   5.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   9.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.6  

>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 565 PIYT*VVSISRILIPIDSFSLLFVPKP 485
           P+Y  +++I +I +P+  +   F P+P
Sbjct: 333 PLYYNIINIEQIPVPVPIYCGNFPPRP 359


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = +2

Query: 629 WFIRSEIGNKSLVEIDKQFNISKSI 703
           W++ +EIG++ L ++ +++N+ ++I
Sbjct: 298 WYMSTEIGSRDLCDV-QRYNLLETI 321


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +1

Query: 355 IYKRYLVFEPAYILKVSLSCYWF 423
           I+   L+ E + +++ + SC+W+
Sbjct: 175 IFGNRLIEESSSVMEAAYSCHWY 197


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -3

Query: 603 YCYNYIDNPTNLYLFILRSFPFHVFSSQLTPF 508
           YC N+   P   ++ I    P       LTPF
Sbjct: 123 YCGNFPPRPMGPWISIQEQIPRFRHIGPLTPF 154


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -3

Query: 603 YCYNYIDNPTNLYLFILRSFPFHVFSSQLTPF 508
           YC N+   P   ++ I    P       LTPF
Sbjct: 364 YCGNFPPRPMGPWISIQEQIPRFRHIGPLTPF 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,491
Number of Sequences: 438
Number of extensions: 4532
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)