Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00948
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37700.1 68415.m04623 CER1 protein, putative similar to CER1 ...    30   1.5  
At3g26210.1 68416.m03270 cytochrome P450 71B23, putative (CYP71B...    29   2.6  
At3g19230.1 68416.m02440 leucine-rich repeat family protein cont...    29   3.4  
At1g62050.1 68414.m06999 ankyrin repeat protein-related contains...    28   7.9  

>At2g37700.1 68415.m04623 CER1 protein, putative similar to CER1
           GI:1199467 and maize gl1 homolog (glossy1 locus)
           GI:1209703 from [Arabidopsis thaliana]; may be involved
           in wax biosynthesis; contains a SUR2-type
           hydroxylase/desaturase catalytic domain (PS50242)
          Length = 493

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 705 KIDLLILNCLSISTKDLFPISLRINQIFTNKFKKYCYNYIDNPTNLYL-FILRSFPFHVF 529
           K D + L  L+ S   ++ + L    + ++     CY ++  P  L L FILRSF F  F
Sbjct: 287 KPDAIHLTHLT-SLDSIYHLRLGFASLSSHPLSSRCYLFLMKPFALILSFILRSFSFQTF 345

Query: 528 SSQLTPFR 505
             +   FR
Sbjct: 346 VVERNRFR 353


>At3g26210.1 68416.m03270 cytochrome P450 71B23, putative (CYP71B23)
           Identical to Cytochrome P450 71B23
           (SP:Q9LTM0)[Arabidopsis thaliana];contains Pfam profile:
           PF00067 cytochrome P450
          Length = 501

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 276 VNLKRDFYKLAAIIMHIQSCFMNFQHST-IKLQKMEDFATNIKLILSVERFSRFFP 112
           VNLK+  + L+A I+   +   N   S  I    MED A+  + I +   FS FFP
Sbjct: 168 VNLKKALFTLSASIVCRLAFGQNLHESEFIDEDSMEDLASRSEKIQAKFAFSNFFP 223


>At3g19230.1 68416.m02440 leucine-rich repeat family protein
           contains Pfam profile:PF00560 LRR:Leucine Rich Repeat
           domains; similar to light repressible receptor protein
           kinase (GI:1321686)[Arabidopsis thaliana]
          Length = 519

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 684 NCLSISTKDLFPISLRINQIFTNKFKKYCYNYIDNPTNLYL 562
           N  +I  KDL PI   +        +K+CYN+    T+ YL
Sbjct: 51  NTTTIKQKDLVPILSTLRYFPDKSSRKHCYNFPVAKTSKYL 91


>At1g62050.1 68414.m06999 ankyrin repeat protein-related contains
           weak hit to Pfam profile PF00023: Ankyrin repeat
          Length = 497

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = -1

Query: 179 KWKILQRI*NLF*ASKDFPGFFPIRLSIPNRPILPVLIYTLQVGEL 42
           K K + R+ +L   +K  PG FP++LSIP  P + V+I   +  EL
Sbjct: 351 KVKAVARMRDLL-TTKFPPGTFPVKLSIPVVPTVKVVITFTKFVEL 395


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,420,948
Number of Sequences: 28952
Number of extensions: 283764
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)