Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00947
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 94 2e-20
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 71 2e-13
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 65 9e-12
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 62 8e-11
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 49 6e-07
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo... 43 5e-05
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 42 7e-05
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 39 9e-04
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce... 34 0.019
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 33 0.057
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 30 0.40
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 29 0.54
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 28 1.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.8
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 26 5.0
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 6.6
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 8.7
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 8.7
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 25 8.7
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.7
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 25 8.7
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 25 8.7
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 25 8.7
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 94.3 bits (224), Expect = 2e-20
Identities = 48/93 (51%), Positives = 63/93 (67%)
Frame = +3
Query: 255 NKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVS 434
NK EAE+LK EGN + A+ Y +AL+ YT+AIEIDP + VYY NRAAA+ +L E AV
Sbjct: 79 NKEEAEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVE 138
Query: 435 DCTTALALQPDYSKAYGRLGLALTASRDTARRA 533
D T L+L P +++A+GRLG A + D A A
Sbjct: 139 DALTCLSLDPHHARAFGRLGRAKLSLGDAAAAA 171
Score = 43.2 bits (97), Expect = 4e-05
Identities = 17/43 (39%), Positives = 31/43 (72%)
Frame = +1
Query: 70 VAASIVNFLKQQLDGDSLSPDSRESVEVGVQCIETAFELTTED 198
V A+I+++LKQ + S+S + +ES+EV QCI+ +F++ E+
Sbjct: 6 VTAAIIDYLKQAITTGSISEEEKESLEVAAQCIQDSFKIKPEE 48
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 629 DLSGLLRNPALINMATEMLTNPNMQNLI 712
DL L+ NPA++NMA ++ + + N++
Sbjct: 233 DLGSLMNNPAVMNMARNLMQSGALNNIM 260
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 629 DLSGLLRNPALINMATEMLTNPNMQN 706
DLS L NP L N+A + N N N
Sbjct: 280 DLSSLANNPQLQNLARNFMNNNNNGN 305
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 70.5 bits (165), Expect = 2e-13
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = +3
Query: 264 EAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCT 443
EA LKNE N+ +K +A++ YT+AIE+D NA+ Y NR+ AH + D A++D +
Sbjct: 4 EALELKNEANKFLKEGHIVQAIDLYTKAIELDSTNAILYSNRSLAHLKSEDYGLAINDAS 63
Query: 444 TALALQPDYSKAYGRLGLA 500
A+ P+Y+KAY R A
Sbjct: 64 KAIECDPEYAKAYFRRATA 82
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/64 (40%), Positives = 34/64 (53%)
Frame = +3
Query: 300 MKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTALALQPDYSKA 479
+K+E Y A+ ++AIE DP A Y RA AH + P+ AV D ALAL P A
Sbjct: 50 LKSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAA 109
Query: 480 YGRL 491
+L
Sbjct: 110 RKKL 113
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 65.3 bits (152), Expect = 9e-12
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = +3
Query: 228 CPSATGAARNKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRN----AVYYCNRAA 395
C +A + + E KN+GN+L + Y +A EKY+ A++IDP N A Y NRA
Sbjct: 210 CTTAKTLFKQVRKLENTKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRAT 269
Query: 396 AHFRLCDPEAAVSDCTTALALQPDYSK 476
RL PE A+SD ALA+ Y K
Sbjct: 270 VLLRLKRPEEALSDSDNALAIDSSYLK 296
Score = 55.6 bits (128), Expect = 7e-09
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Frame = +3
Query: 234 SATGAARNKAE-AERLKNEGNELMKAERYNEALEKYTRAIEI--DPRNAVYYCNRAAAHF 404
+ T + + AE AE+ K GN K ++Y EA++ YT AI++ D A+YY NRAA +
Sbjct: 11 AGTESQQEPAELAEKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYM 70
Query: 405 RLCDPEAAVSDCTTALALQPDYSKAYGRL 491
++ + E A+ D + ++PD K R+
Sbjct: 71 QIGEFELALCDAKQSDRIKPDVPKTQSRI 99
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 62.1 bits (144), Expect = 8e-11
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Frame = +3
Query: 267 AERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTT 446
AE LK +GN + Y A++ +T+AI +D RN + Y NR+A + D A+ D T
Sbjct: 2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATK 61
Query: 447 ALALQPDYSKAYGRLGLAL--TASRDTARRA 533
L+PD++K + R G AL D AR A
Sbjct: 62 CTELKPDWAKGWSRKGAALHGLGDLDAARSA 92
Score = 61.3 bits (142), Expect = 1e-10
Identities = 32/88 (36%), Positives = 51/88 (57%)
Frame = +3
Query: 255 NKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVS 434
+KAE R+K GNEL K+ + A+++YT + P + + NRAAA+ ++ P +
Sbjct: 397 DKAEESRVK--GNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIR 454
Query: 435 DCTTALALQPDYSKAYGRLGLALTASRD 518
DC A+ L P+++KAY R AL +D
Sbjct: 455 DCNKAIELDPNFAKAYVRKAQALFMLKD 482
Score = 37.1 bits (82), Expect = 0.003
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Frame = +3
Query: 258 KAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSD 437
K +A++ K GNE K + A+E+Y +A + ++ Y N AAA+F + +
Sbjct: 262 KKKADQEKQIGNENYKKRNFPVAIEQYKKAWD-TYKDITYLNNLAAAYFEADQLDDCIKT 320
Query: 438 CTTAL----ALQPDY---SKAYGRLG 494
C A+ L+ D+ +KA GRLG
Sbjct: 321 CEDAIEQGRELRADFKLIAKALGRLG 346
Score = 30.3 bits (65), Expect = 0.31
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +3
Query: 282 NEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTA 449
N +K E + +AIE+DP A Y +A A F L D + C A
Sbjct: 438 NRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEA 493
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 49.2 bits (112), Expect = 6e-07
Identities = 31/89 (34%), Positives = 45/89 (50%)
Frame = +3
Query: 234 SATGAARNKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLC 413
S T R K AE LK GN+ + Y A++ YT+AI + +++ NRAA + +
Sbjct: 141 SMTKEERAKLAAE-LKTLGNKAYGQKEYANAIDYYTQAITCS-HDPIFFSNRAACYAAIG 198
Query: 414 DPEAAVSDCTTALALQPDYSKAYGRLGLA 500
D E + D + AL+L Y KA R A
Sbjct: 199 DFEQVIKDTSEALSLDSSYVKALNRRSAA 227
>SPAC2F3.02 |||ER protein translocation subcomplex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 42.7 bits (96), Expect = 5e-05
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Frame = +3
Query: 264 EAERLKNEGNELMKAERYNEALEKYTRAIEI-------DP------RNAVYYCNRAAAHF 404
+ ++K NE K ++Y EA + Y A+++ +P +V CNRAAA
Sbjct: 61 QVNKMKQTANEAFKRKKYEEAKKLYGLALQLALNRCTWEPSILTREEASVMLCNRAAAEI 120
Query: 405 RLCDPEAAVSDCTTALALQPDYSKAYGRLGLALTA 509
L A++D AL ++ +Y K Y R AL A
Sbjct: 121 ALSQFPEALADANAALKIRNNYGKCYYRKAKALEA 155
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 42.3 bits (95), Expect = 7e-05
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +3
Query: 267 AERLKNEGNELMKAERYNEALEKYTRAI--EIDPRN--AVYYCNRAAAHFRLCDPEAAVS 434
A+ + GNE ++RY +A E YT+A+ + ++ Y NRAA + + ++
Sbjct: 64 AQNFREHGNECFASKRYKDAEEFYTKALAQKCGDKDIEIACYSNRAACNLLFENYRQVLN 123
Query: 435 DCTTALALQPDYSKAYGRLGLALTA 509
DC L ++KAY R AL A
Sbjct: 124 DCAQVLQRDSTHAKAYYRSAKALVA 148
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 38.7 bits (86), Expect = 9e-04
Identities = 17/62 (27%), Positives = 35/62 (56%)
Frame = +3
Query: 309 ERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTALALQPDYSKAYGR 488
++YN+A E Y +A+ D RN ++C+ ++++ + A+ + A+ L P S+ +
Sbjct: 598 QKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDALDAYSRAIRLNPYISEVWYD 657
Query: 489 LG 494
LG
Sbjct: 658 LG 659
>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 34.3 bits (75), Expect = 0.019
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = +3
Query: 309 ERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTALALQPDYSKAYGR 488
E YN+A + D N + A A L PE A+S TAL QP+Y +A
Sbjct: 177 ESYNDAFYVFEELNGTDS-NPMTLTGMACADICLLRPEEALSSLKTALDSQPNYEEALSN 235
Query: 489 LGLALT 506
+ A+T
Sbjct: 236 MTTAIT 241
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 32.7 bits (71), Expect = 0.057
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 246 AARNKAEAERLKNEGNELMKAERYNEALEKYTRAIEIDPRNA 371
A +A R+ N+ +L + + Y +A++ Y +AI+ DP+NA
Sbjct: 627 AYMRQAREFRVHNDREKLKRQKLYIKAIQSYDQAIKFDPKNA 668
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 288 GNELMKAERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCD 416
G E + E++ T A+E +P N N A F+LC+
Sbjct: 751 GRESKNVDYLKESVRYATLALEKNPENPSLLFNVAFVQFQLCE 793
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 29.9 bits (64), Expect = 0.40
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +3
Query: 321 EALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTALALQPDYSKAYGRLGLA 500
+ +++ AI + Y + + H R V DCT AL + P K R GLA
Sbjct: 25 DVFDEFLNAIGNENTITPVYADSSLTHLRKKSYTKVVHDCTYALVINPYDKKVIWRRGLA 84
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 29.5 bits (63), Expect = 0.54
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +1
Query: 232 RQRLGPPATRLKPNDSRTKATSS*KLSVTTKRLKSTRAP*RSTQET 369
R R+ PPA KP+ SRT SS LS T++ ST S + T
Sbjct: 481 RYRVAPPAENEKPHTSRTNTASS--LSSTSEDQVSTHGSISSAKVT 524
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/64 (21%), Positives = 30/64 (46%)
Frame = +3
Query: 309 ERYNEALEKYTRAIEIDPRNAVYYCNRAAAHFRLCDPEAAVSDCTTALALQPDYSKAYGR 488
+ Y + + + +A++ +P N + + AA AVS A++LQP Y +
Sbjct: 452 KEYERSADCFRQALQDEPSNEILWNKLGAALTNAEKNTEAVSSYNRAVSLQPQYVRVRSN 511
Query: 489 LGLA 500
+ ++
Sbjct: 512 MAVS 515
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 3.8
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +1
Query: 250 PATRLKPNDSRTKATSS*KLSVTTKRLKST----RAP*RSTQETRSTTAIARLRISGCAT 417
P T +S T TSS L+ +T ST P S+ S+TAIA I +T
Sbjct: 3407 PITSSTVVNSSTPITSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASSSILNSST 3466
Query: 418 PRQR*ATVPQHSPY-SLTIARRTDALGSRS 504
P + + +P S T+ + +GS S
Sbjct: 3467 PITSSSVLNSSTPISSSTVITSSVVIGSSS 3496
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 629 DLSGLLRNPALINMATEMLTNPNMQNLI 712
+L+ +L NP + + EM +NP M ++I
Sbjct: 143 ELANMLSNPMVQSSINEMFSNPQMLDMI 170
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 6.6
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 4/117 (3%)
Frame = +1
Query: 310 SVTTKRLKSTRAP*RSTQETRSTTAIARLRISGCATPRQR*ATVPQHSPYSLTIARR--T 483
+ TT +++T P T T A+ L ++ TP + T P + + T
Sbjct: 165 TTTTPMVETTTIPTVETMTTPMVEAMTILPMAAMTTPMEETTTTPMEETTTTPMVETMIT 224
Query: 484 DALGSRSPPRETLRGARCLRPRRSTRP*ERVL-PRKPPTR*PNLS-TAP*RSEWLTP 648
+ + + P E + G + R+T P E ++ P T P + T P TP
Sbjct: 225 PMVEAMTTPTEVV-GRSMVSTIRTTTPMEAMITPTVETTTLPTAAMTTPVEETTTTP 280
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 578 YRENLQLADQTLAQRPNDLSGLLRNPALINMATEML-TNPNMQNLI 712
+R+NL L + L P+D S L+ P + +L NP + N++
Sbjct: 259 HRKNLILVRRCLKMLPDDASALITTPEDAMLTNPVLDKNPLIHNVL 304
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 504 TASRDTARRALPTPAPLNSTLRTSPTEKTSNS 599
T + T+R P P+ +NS SP TS S
Sbjct: 461 TTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 566 ENESYRENLQLADQTLAQRPNDLSGLLRNPALINMATEML--TNPNMQN 706
ENE Y + LAQ ++ + + R P N TE + NPN N
Sbjct: 95 ENELYESSQDCGHSRLAQILSEENQIKRLPQSDNTTTERIIENNPNYSN 143
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 463 GCRASAVVQSLTAASGSHSLK 401
G AS+ VQ LTA SH LK
Sbjct: 503 GSVASSAVQRLTAVKNSHKLK 523
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +3
Query: 237 ATGAARNKAEAERLKNE---GNELMKAERYNE 323
A G+ R KAE ER+KN + ++ ER NE
Sbjct: 483 AEGSRRPKAETERIKNSIILDMQRLEEERLNE 514
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 572 ESYRENLQLADQTLAQRPNDLSGLLRNPAL 661
+S R+ L++A T Q GLL NPAL
Sbjct: 212 KSLRKGLEIAKYTETQGIMSARGLLENPAL 241
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 270 ERLKNEGNELMKAERYNEALEKYTRAI 350
E+L +GN + Y EA++KY +A+
Sbjct: 33 EQLVTQGNMAYAQKNYEEAVDKYGQAL 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,922
Number of Sequences: 5004
Number of extensions: 46249
Number of successful extensions: 197
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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