Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00945
         (699 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5N9 Cluster: Nucleoplasmin isoform 2; n=7; Endoptery...   138   9e-32
UniRef50_A2I421 Cluster: Nucleoplasmin isoform 1-like protein; n...    64   3e-09
UniRef50_Q27415 Cluster: Nucleoplasmin-like protein; n=4; Sophop...    59   9e-08
UniRef50_Q9VAC4 Cluster: CG7911-PA; n=2; Sophophora|Rep: CG7911-...    57   5e-07
UniRef50_UPI00015B5EC5 Cluster: PREDICTED: similar to nucleoplas...    54   3e-06
UniRef50_P91753 Cluster: Mitotic apparatus protein p62; n=3; Ech...    46   7e-04
UniRef50_Q8WSV9 Cluster: Nucleolar protein; n=2; Patiria pectini...    37   0.55 
UniRef50_Q24CJ4 Cluster: Putative uncharacterized protein; n=1; ...    34   2.9  
UniRef50_Q2J304 Cluster: Glycoside hydrolase, family 4 precursor...    34   3.9  
UniRef50_A7RZK8 Cluster: Predicted protein; n=1; Nematostella ve...    33   8.9  

>UniRef50_Q2F5N9 Cluster: Nucleoplasmin isoform 2; n=7;
           Endopterygota|Rep: Nucleoplasmin isoform 2 - Bombyx mori
           (Silk moth)
          Length = 187

 Score =  138 bits (335), Expect = 9e-32
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +1

Query: 58  MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSL 237
           MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSL
Sbjct: 1   MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSL 60

Query: 238 QEAVKL 255
           QEAVKL
Sbjct: 61  QEAVKL 66



 Score =  100 bits (239), Expect = 4e-20
 Identities = 57/119 (47%), Positives = 60/119 (50%)
 Frame = +3

Query: 249 KTPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPVXXXXXXXXXXXXXXXXXXXXXXX 428
           K PVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV                       
Sbjct: 65  KLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPVHLIGHHLLGALLEEFEDMEEMEE 124

Query: 429 XXXXXXXXXXSQFKEDENKRKGAGXXXXXXXXXXXXVNPRAKKRKCRIMPKAKLHRPRR 605
                     SQFKEDENKRKGAG              P+ KK K     K K   P++
Sbjct: 125 EMLDEEEGDDSQFKEDENKRKGAGKRKPNEDEDNEEGEPKGKKAKMSNNAKGKAASPKK 183


>UniRef50_A2I421 Cluster: Nucleoplasmin isoform 1-like protein; n=1;
           Maconellicoccus hirsutus|Rep: Nucleoplasmin isoform
           1-like protein - Maconellicoccus hirsutus (hibiscus
           mealybug)
          Length = 176

 Score = 64.1 bits (149), Expect = 3e-09
 Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 7/72 (9%)
 Frame = +1

Query: 58  MTDEFFYGVTLSSSHQSETWDPEAKAE-------YPRSNKLVIRQALLGPDAKPDELNVI 216
           MT+++F+G+TL  +  S+ WDP+ K +       Y   + L+++QA+LGP+AK  E+NV+
Sbjct: 1   MTEDYFWGLTLDKNKTSDLWDPDVKNDANDSTQGYRGEHTLLVKQAVLGPEAKDGEINVV 60

Query: 217 QVEAMSLQEAVK 252
           +VEAM  +  VK
Sbjct: 61  EVEAMGYKSDVK 72



 Score = 47.2 bits (107), Expect = 4e-04
 Identities = 20/37 (54%), Positives = 25/37 (67%)
 Frame = +3

Query: 249 KTPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 359
           K P+ VLK G      LD+ FPD PVTF L++GSGP+
Sbjct: 72  KYPITVLKGGSQHQSLLDLLFPDPPVTFKLIKGSGPI 108


>UniRef50_Q27415 Cluster: Nucleoplasmin-like protein; n=4;
           Sophophora|Rep: Nucleoplasmin-like protein - Drosophila
           melanogaster (Fruit fly)
          Length = 152

 Score = 59.3 bits (137), Expect = 9e-08
 Identities = 28/55 (50%), Positives = 38/55 (69%)
 Frame = +1

Query: 58  MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQV 222
           M +E FYGVTL++   S TWD +   +Y R  KLVI+Q LLG +AK +E NV++V
Sbjct: 1   MAEESFYGVTLTAESDSVTWDVDE--DYARGQKLVIKQILLGAEAKENEFNVVEV 53



 Score = 49.6 bits (113), Expect = 7e-05
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = +3

Query: 243 SSKTPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 359
           S + P+AVLK GE+R V  D+EF ++ VTF L++GSGPV
Sbjct: 59  SVQIPIAVLKAGETRAVNPDVEFYESKVTFKLIKGSGPV 97


>UniRef50_Q9VAC4 Cluster: CG7911-PA; n=2; Sophophora|Rep: CG7911-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 156

 Score = 56.8 bits (131), Expect = 5e-07
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = +3

Query: 240 RSSKTPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 359
           ++ K P+AVLKVGE+R +R ++EFP+  VTF LVQGSGPV
Sbjct: 68  KTLKIPIAVLKVGETRSLRPNVEFPNGSVTFKLVQGSGPV 107



 Score = 50.4 bits (115), Expect = 4e-05
 Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = +1

Query: 58  MTDEFFYGVTLSSSHQSETWD-PEAKAEY-PRSNKLVIRQALLGPDAKPDELNVIQVE 225
           M  E FYGVTLS       ++ P+   EY   S+KL+I+Q  LGP+AK  E NV+Q E
Sbjct: 1   MESESFYGVTLSEKEAIAQFEVPDVPEEYIVHSHKLIIKQISLGPEAKTGEFNVVQAE 58


>UniRef50_UPI00015B5EC5 Cluster: PREDICTED: similar to
           nucleoplasmin-like protein; n=1; Nasonia
           vitripennis|Rep: PREDICTED: similar to
           nucleoplasmin-like protein - Nasonia vitripennis
          Length = 141

 Score = 54.0 bits (124), Expect = 3e-06
 Identities = 21/37 (56%), Positives = 31/37 (83%)
 Frame = +3

Query: 249 KTPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSGPV 359
           K P+A+L++G++  + LD+ FPD PVTFTL++GSGPV
Sbjct: 28  KIPIALLEMGKTSQIILDLSFPDPPVTFTLIKGSGPV 64



 Score = 40.3 bits (90), Expect = 0.044
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = +1

Query: 172 ALLGPDAKPDELNVIQVEAMSLQEAVKL 255
           ALLGP+AK  ELNV+QVEAM L+  +K+
Sbjct: 2   ALLGPEAKAGELNVLQVEAMGLKGPIKI 29


>UniRef50_P91753 Cluster: Mitotic apparatus protein p62; n=3;
           Echinacea|Rep: Mitotic apparatus protein p62 -
           Lytechinus pictus (Painted sea urchin)
          Length = 411

 Score = 46.4 bits (105), Expect = 7e-04
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
 Frame = +1

Query: 58  MTDEFFYGVTLSSSHQSETWDPEA--------KAEYPRSNKLVIRQALLGPDAKPDELNV 213
           M  E+F+G TLS   +   WDPE+          E   S+ L ++QA+LG +AK D+ NV
Sbjct: 1   MAKEYFWGATLSKDKKIFKWDPESDFLDDEDDDEEDSISHFLFLKQAVLGVNAKDDDRNV 60

Query: 214 IQVEAMSLQEAVKLQ 258
           I+VE ++      +Q
Sbjct: 61  IEVETINFDGETVIQ 75


>UniRef50_Q8WSV9 Cluster: Nucleolar protein; n=2; Patiria
           pectinifera|Rep: Nucleolar protein - Asterina
           pectinifera (Starfish)
          Length = 346

 Score = 36.7 bits (81), Expect = 0.55
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
 Frame = +1

Query: 58  MTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNK--------LVIRQALLGPDAKPDELNV 213
           M+ EFF+G +L+ + +   W+P    E    N         L ++QA+LG  AK  E NV
Sbjct: 1   MSKEFFWGDSLTGTKKEVKWNPSLDDEDDFDNLDSDGIQHFLFLKQAVLGATAKEGERNV 60

Query: 214 IQVE 225
           +++E
Sbjct: 61  VEIE 64


>UniRef50_Q24CJ4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 825

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +1

Query: 103 QSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQEAVKLQSQY*KLVN 282
           +S+  + E K  Y   ++   +Q L+  D  P+E+ +IQ   M  Q+    QSQY +L N
Sbjct: 102 KSQIHNYEQKQNYHSHDQTQQQQDLMDSDPNPNEIIIIQQNYMIQQQQQLTQSQYDQLQN 161

Query: 283 Q 285
           Q
Sbjct: 162 Q 162


>UniRef50_Q2J304 Cluster: Glycoside hydrolase, family 4 precursor;
           n=6; Alphaproteobacteria|Rep: Glycoside hydrolase,
           family 4 precursor - Rhodopseudomonas palustris (strain
           HaA2)
          Length = 426

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -2

Query: 698 RLHNLDIIIPKMATVR--LAQNGSPGGLFISWHSSWAMQLCLWHYSTFSLFCPWVHLLHY 525
           RL  +D  +PK   +R  L +NG PGGLF +  +   + L           CP    L+Y
Sbjct: 92  RLWKMDFEVPKKHGIRHPLGENGGPGGLFFTLRT---LPLVFDFIRDIEELCPEALFLNY 148

Query: 524 LHPHS 510
            +P S
Sbjct: 149 SNPES 153


>UniRef50_A7RZK8 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 362

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +1

Query: 67  EFFYGVTLSSSHQSETWDPEAKAEYPR----SNKLVIRQALLGPDAKPDELNVIQVEAMS 234
           E F+G  LS S  + TW+PE   E        +KLV+ QA LG  +K    ++++V +M 
Sbjct: 7   EDFWGCVLSKSEDTVTWNPEFDGEDTLLGQIEHKLVLSQACLG--SKATGKSMVEVTSMD 64

Query: 235 LQ 240
            +
Sbjct: 65  FK 66


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,169,246
Number of Sequences: 1657284
Number of extensions: 11411061
Number of successful extensions: 28982
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28962
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)