Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00945
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)         33   0.29 
SB_51946| Best HMM Match : PhyH (HMM E-Value=0.0025)                   31   0.68 
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)                  28   6.3  
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  28   8.4  

>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
          Length = 282

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +1

Query: 67  EFFYGVTLSSSHQSETWDPEAKAEYPR----SNKLVIRQALLGPDAKPDELNVIQVEAMS 234
           E F+G  LS S  + TW+PE   E        +KLV+ QA LG  +K    ++++V +M 
Sbjct: 7   EDFWGCVLSKSEDTVTWNPEFDGEDTLLGQIEHKLVLSQACLG--SKATGKSMVEVTSMD 64

Query: 235 LQ 240
            +
Sbjct: 65  FK 66


>SB_51946| Best HMM Match : PhyH (HMM E-Value=0.0025)
          Length = 230

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 260 DWSFTASCS-DMASTCITFNSSGLASGPNNA*RMTSLLLRG 141
           DW+F    + D+   CI+ + + + +GP +  R TS L+RG
Sbjct: 151 DWAFNPHTNQDLVMICISIDDTNIENGPVDWDRFTSTLVRG 191


>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 213 DTGGSHVTTRSSKTPVAVLKVGESRHVRL---DIEFPDAPVTFTLVQGS 350
           +T   HVT RSS +P  ++     R +RL   D E  D  +  TL + S
Sbjct: 535 ETSTDHVTRRSSASPEKIVSKTRDRKIRLVIIDYESTDVDLQATLKRSS 583


>SB_24885| Best HMM Match : HOOK (HMM E-Value=0.00023)
          Length = 873

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 151 NKLVIRQALLGPDAKPDELNVIQVEAMSLQ 240
           NKLV+ Q LLG  AK + + +++ E   L+
Sbjct: 304 NKLVLEQQLLGLSAKEERIEILEEENKKLK 333


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 71  FSMVSPFHHHISQRHGIQRQKQNTHAATSSSFVK 172
           FS+  P    I+ RHG+ RQK   HA+   SF K
Sbjct: 338 FSLHRPVED-INYRHGLGRQKLLFHASRGKSFYK 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,792,380
Number of Sequences: 59808
Number of extensions: 368631
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)