Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00945
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   4.2  
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      28   5.6  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    28   5.6  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    28   5.6  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    28   7.4  
M11499-1|AAA28165.1|  259|Caenorhabditis elegans protein ( C.ele...    28   7.4  
Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   9.8  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    27   9.8  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    27   9.8  

>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 118 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 240
           + EA A   R+ K +   ALL PDA PD  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
           protein F26D2.4 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 684 RYNYT*NGDGTTSPKWVSRRFVHFLAFFLGDAA-LPLALFD 565
           RYNY    D T+  + + R   HF+ + L   A LP AL D
Sbjct: 120 RYNYLVRTDSTSQSRKIKRVIQHFINYLLAFLAFLPAALED 160


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +2

Query: 287 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 385
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = +2

Query: 287 ACTS--GH*IPRCACYIYSCSGFGASTLNWTPSPW 385
           ACT+  G  I  C CY   C+         TPSPW
Sbjct: 185 ACTNLAGTNIQGCCCYKQDCTSLAPMNNPPTPSPW 219


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 611 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 522
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 611 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 522
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 611 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 522
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 611 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 522
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 611 WHSSWA-MQLCLWHYSTFSLFCPWVHLLHYL 522
           WHS+   +  CL  + TF+ FC  + +LHY+
Sbjct: 291 WHSTAIFLTRCLVWHDTFTEFCGKLDILHYI 321


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
           protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 356 WPRTLNKSKCNRRIWEFNVQTYMP*FTNFQYC-DWSFTASCSDMASTCITFNSSGLAS 186
           W +++N  KC RR +  +VQT          C D   T     M+ST + +N +G +S
Sbjct: 209 WAKSINLDKCTRRPYIHHVQT--------PVCKDCQQTLEQDKMSSTVLNYNITGTSS 258


>M11499-1|AAA28165.1|  259|Caenorhabditis elegans protein (
           C.elegans vitellogenin6 gene ancoding yolk protein
           VIT180. ).
          Length = 259

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 356 WPRTLNKSKCNRRIWEFNVQTYMP*FTNFQYC-DWSFTASCSDMASTCITFNSSGLAS 186
           W +++N  KC RR +  +VQT          C D   T     M+ST + +N +G +S
Sbjct: 209 WAKSINLDKCTRRPYIHHVQT--------PVCKDCQQTLEQDKMSSTVLNYNITGTSS 258


>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 602 SWAMQLCLWHYSTFSLFCPWVHLLHY 525
           SWA+ +C+   STF+L C    +LHY
Sbjct: 80  SWALLVCIIE-STFALICFLAVMLHY 104


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 47  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 163
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 700 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 737


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 47  VKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSS 163
           V SS +T  +  S FHHH SQ  G  R  +N  A T+++
Sbjct: 578 VPSSSQTMATTSSSFHHHSSQA-GPSRDIENGEAPTATA 615


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           a protein.
          Length = 1650

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 356 WPRTLNKSKCNRRIWEFNVQTYMP*FTNFQYC-DWSFTASCSDMASTCITFNSSGLAS 186
           W +++N  KC RR +  +VQT          C D   T     M+ST + +N +G +S
Sbjct: 209 WAKSINFDKCTRRPYIHHVQT--------PVCKDCQQTLEQDKMSSTVLNYNITGTSS 258


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
           structural genes (yolk protein genes) protein 6, isoform
           c protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 356 WPRTLNKSKCNRRIWEFNVQTYMP*FTNFQYC-DWSFTASCSDMASTCITFNSSGLAS 186
           W +++N  KC RR +  +VQT          C D   T     M+ST + +N +G +S
Sbjct: 209 WAKSINFDKCTRRPYIHHVQT--------PVCKDCQQTLEQDKMSSTVLNYNITGTSS 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,553,247
Number of Sequences: 27780
Number of extensions: 279597
Number of successful extensions: 722
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)