Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00945
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38080.1 68418.m04588 hypothetical protein                          29   3.0  
At1g16240.1 68414.m01945 syntaxin 51 (SYP51) identical to SP|Q9S...    29   3.0  
At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferas...    29   3.9  
At3g58050.1 68416.m06471 expressed protein                             28   5.2  
At4g33890.2 68417.m04809 expressed protein                             27   9.0  
At4g33890.1 68417.m04808 expressed protein                             27   9.0  
At1g52420.1 68414.m05917 glycosyl transferase family 1 protein c...    27   9.0  

>At5g38080.1 68418.m04588 hypothetical protein 
          Length = 157

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = -2

Query: 554 FCPWVHLLHYLHPHSV---ALPCSFSFILIFL 468
           FC +VHLL+ + PH      LPC   F+ + +
Sbjct: 81  FCIFVHLLYSVSPHLALYFGLPCLLGFVAVMI 112


>At1g16240.1 68414.m01945 syntaxin 51 (SYP51) identical to SP|Q9SA23
           Syntaxin 51 (AtSYP51) {Arabidopsis thaliana}; supporting
           cDNA gi|13811643|gb|AF355755.1|AF355755
          Length = 232

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +1

Query: 166 RQALLGPDAKPDELNVIQVEAMSLQEAVKLQSQY*KLVNQGM 291
           R +LLGPD KPD+ ++ +V  M  Q  V  Q Q  +  ++G+
Sbjct: 106 RDSLLGPDIKPDD-SMSRVTGMDNQGIVGYQRQVMREQDEGL 146


>At2g03220.1 68415.m00275 galactoside 2-alpha-L-fucosyltransferase /
           xyloglucan alpha-(1,2)-fucosyltransferase (FUT1) (FT1)
           identical to SP|Q9SWH5 Galactoside
           2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan
           alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis
           thaliana}
          Length = 558

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = -3

Query: 346 P*TRVNVTGASGNSMSRRTCLDSPTFNTATGXXXXXXVTWLPPVSHLIHLVWHLDL 179
           P  R     + G +MS   C  SP F            T +P V H   + W L L
Sbjct: 502 PENRTTPDPSCGRAMSMEPCFHSPPFYDCKAKTGIDTGTLVPHVRHCEDISWGLKL 557


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 85  TLSSSHQSETWDPEAKAEYPRSN 153
           T  S H  + W+P    +YPRSN
Sbjct: 834 TRDSLHSKQVWEPMEPKKYPRSN 856


>At4g33890.2 68417.m04809 expressed protein
          Length = 342

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 145 RSNKLVIRQALLGPDAKPDELNVIQVEAMS-LQEAVKLQS 261
           RS KL  R + LGP  KP  L     E+MS  Q A +L S
Sbjct: 121 RSRKLRDRPSPLGPLGKPHSLTTTNEESMSKAQSATELLS 160


>At4g33890.1 68417.m04808 expressed protein
          Length = 342

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 145 RSNKLVIRQALLGPDAKPDELNVIQVEAMS-LQEAVKLQS 261
           RS KL  R + LGP  KP  L     E+MS  Q A +L S
Sbjct: 121 RSRKLRDRPSPLGPLGKPHSLTTTNEESMSKAQSATELLS 160


>At1g52420.1 68414.m05917 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 670

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
 Frame = -2

Query: 671 PKMATVRLAQNGSPGGLFISWHSS-----WAMQLCLWHYSTFSLFCPWVH 537
           P++ + R  + G  GG    W  S     W + + LW Y  F +   W H
Sbjct: 28  PRVYSGRTPRRGHGGGGAFQWFRSSRLVYWLLLITLWTYLGFYVQSRWAH 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,776,484
Number of Sequences: 28952
Number of extensions: 260341
Number of successful extensions: 624
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)