Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00944
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 29 0.75
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 27 4.0
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 27 4.0
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 26 5.3
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.3
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 26 5.3
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 26 5.3
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe... 26 5.3
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc... 26 7.0
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c... 26 7.0
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.2
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 29.1 bits (62), Expect = 0.75
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 131 ARTAF*GSTFAVSRQNDKTDCNQTPHFTQSS 39
AR F +F V+ N DCN TPH +S
Sbjct: 289 ARLNFLSFSFCVNPMNQSLDCNTTPHRRNAS 319
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 103 KVEP*NAVLAQKAHVQQSK-NQKTNRVR*QQMTRLPSKKCSRKWNAWREP 249
+V+P NA+ HV K + NR Q++ SKKC +W + EP
Sbjct: 19 EVQP-NALRPVAFHVFTRKYDLNINRDSLQELASFVSKKCGSQWRSQCEP 67
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/30 (36%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +2
Query: 581 HYSSQRKNVRRRRCGKM-NATRVGALRMVN 667
++S QR+ VR R+C K+ N T + +++++N
Sbjct: 447 YFSLQRRLVRLRKCLKVSNTTELKSMKLIN 476
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/42 (28%), Positives = 15/42 (35%)
Frame = +2
Query: 197 RVCRPRNAVGSGMPGGNRVESNCHFCRCSDSGVAECLRQDSC 322
R CR G GG+R NC+ C +C C
Sbjct: 96 RDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKC 137
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/39 (23%), Positives = 17/39 (43%)
Frame = -2
Query: 713 FSGVLLVMHSILVHMGLPSEVHQHVLHSFFHIVFGAHSF 597
F +L + + + LP ++ H LH F H + +
Sbjct: 35 FYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYHY 73
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 658 PKCTNTCCIHFSTSSSAHILSLARIMCSVP 569
P TC IHF SS+ + + CS P
Sbjct: 21 PCSLGTCLIHFHEFSSSSFMDPVSLFCSSP 50
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 413 LGLCSLDACRRSSTPKKFELIQGRECAPG 499
L L +L CR S K E+ G +CA G
Sbjct: 89 LALQALKHCRESLPNKSIEIDMGNQCASG 117
>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
phosphopantetheinyl transferase Lys7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 51 EMRCLIAICFIVLARHCESGALKCSP 128
+M +A+ I++ RH S AL+CSP
Sbjct: 43 DMDAKMALASILIKRHLVSTALECSP 68
>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 605 VRRRRCGKMNATRVGALRMVNPCALGWNASL 697
VR +RC + ++RV V +GWN++L
Sbjct: 286 VRLQRCAILKSSRVRDHAWVKSSIVGWNSTL 316
>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 359 PGTSFQRDCNTCVCLDNGL 415
P TSF D N CV D+GL
Sbjct: 236 PATSFIYDFNACVFCDDGL 254
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 74 LFYRFGATLRKWS 112
+FYRFG ++R WS
Sbjct: 528 IFYRFGKSIRAWS 540
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,566,223
Number of Sequences: 5004
Number of extensions: 78827
Number of successful extensions: 258
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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