Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00944
         (780 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    32   0.023
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    26   1.5  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    25   2.0  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   3.5  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   8.0  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   8.0  

>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 31.9 bits (69), Expect = 0.023
 Identities = 21/76 (27%), Positives = 29/76 (38%)
 Frame = +1

Query: 514 QCNSCRCNADGYGICSGELALNTLFEPKKECAPKTMWKNECNTCWCTSDGKPMCTRMECI 693
           +C  C C+   +G      A+ +L EP    A +    N    C     G+  C    C+
Sbjct: 519 KCGICECDGTYHGQRCECSAMESLLEPGMVDACRM--SNASEEC----SGRGQCVCGVCV 572

Query: 694 TNNTPEKSELIQGREC 741
               P   ELI GR C
Sbjct: 573 CERRPNPDELIDGRYC 588



 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 398 CLDNGLGLCSLDACRRSSTPKKFELIQGREC 490
           C   G  +C +  C R   P   ELI GR C
Sbjct: 560 CSGRGQCVCGVCVCERRPNPD--ELIDGRYC 588


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 643 CWCTSDGKPMCTRMECI-TNNTPEK 714
           CW ++D +  C+  EC+ T  TP +
Sbjct: 116 CWGSNDDQESCSSNECVSTTETPTR 140


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
 Frame = +1

Query: 499  IVVANQCNSCRCNADG-YGI-C---SGELALNTLFEPKK--ECAPKTMWKNE--CNTCWC 651
            IV  N C SC C+  G Y   C   SG+         KK  +CAP     +E  C+ C C
Sbjct: 930  IVSGNGCESCNCDPIGSYNASCDTYSGDCFCKPGVVGKKCDKCAPAYYGFSEDGCHACDC 989

Query: 652  TSDGKPMCTRMECITNNTPEKSELIQGREC 741
               G       +C        ++ ++GR C
Sbjct: 990  DPSGS---KGSQCNQYGQCPCNDNVEGRRC 1016



 Score = 23.4 bits (48), Expect = 8.0
 Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = +2

Query: 254  ESNCHFCRCSDSGV--AECLRQDSCDQIIFTEPVRC 355
            E  CH C C  SG   ++C +   C      E  RC
Sbjct: 981  EDGCHACDCDPSGSKGSQCNQYGQCPCNDNVEGRRC 1016


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 133 VPGLHFRAPLSQCRAKTIKQIAIKHLISL 47
           V  +HFR+P +   A  ++ I I HL  L
Sbjct: 323 VLNIHFRSPQTHTMAPWVRTIFINHLPKL 351


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 389  CYNPSGRRCLADNAQVQ 339
            CY+PS R+C  +  Q +
Sbjct: 1447 CYSPSDRQCAEEREQAE 1463


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 251 VESNCHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPGTS 370
           V+ N + C      + + L ++  D  + +EP RC  G +
Sbjct: 4   VQLNLNHCEEVQDMLGQLLIEEKGDVAMLSEPYRCPSGVN 43


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 955,832
Number of Sequences: 2352
Number of extensions: 22607
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81497388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)