Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00944
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.79 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 779 TTVTLVDHVDPGAHS 735
           TTV LVD  DPG H+
Sbjct: 121 TTVELVDATDPGEHN 135



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 528 TTVTLVRHDDPGAHS 484
           TTV LV   DPG H+
Sbjct: 121 TTVELVDATDPGEHN 135


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 667 VYHPKCTNTCCIHFSTSSSA 608
           ++HP C     +H +TSSS+
Sbjct: 400 LHHPNCKINRKVHHTTSSSS 419


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 532 TYNCYTGSPRRSRSA 488
           T  C+TG PR+S  +
Sbjct: 296 TVRCFTGGPRKSHES 310


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 740 HSLPWISSDFSGVLLV 693
           H L W +S+F+G+ ++
Sbjct: 65  HHLKWNASEFAGIRVI 80


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = -3

Query: 673  TWVYHPKCTNTCCIH 629
            TW YH      C IH
Sbjct: 1676 TWGYHHNVNKHCTIH 1690


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,932
Number of Sequences: 438
Number of extensions: 5216
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)