Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00943
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    29   0.72 
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   3.8  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    26   5.1  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   5.1  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    26   5.1  
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe...    26   5.1  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   6.7  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    26   6.7  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    26   6.7  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.9  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 131 ARTAF*GSTFAVSRQNDKTDCNQTPHFTQSS 39
           AR  F   +F V+  N   DCN TPH   +S
Sbjct: 289 ARLNFLSFSFCVNPMNQSLDCNTTPHRRNAS 319


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 103 KVEP*NAVLAQKAHVQQSK-NQKTNRVR*QQMTRLPSKKCSRKWNAWREP 249
           +V+P NA+     HV   K +   NR   Q++    SKKC  +W +  EP
Sbjct: 19  EVQP-NALRPVAFHVFTRKYDLNINRDSLQELASFVSKKCGSQWRSQCEP 67


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/42 (28%), Positives = 15/42 (35%)
 Frame = +2

Query: 197 RVCRPRNAVGSGMPGGNRVESNCHFCRCSDSGVAECLRQDSC 322
           R CR       G  GG+R   NC+ C        +C     C
Sbjct: 96  RDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKC 137


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/39 (23%), Positives = 17/39 (43%)
 Frame = -2

Query: 712 FSGVLLVMHSILVHMGLPSEVHQHVLHSFFHIVFGAHSF 596
           F  +L  +    + + LP  ++ H LH F H     + +
Sbjct: 35  FYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYHY 73


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 413 LGLCSLDACRRSSTPKKFELIQGRECAPG 499
           L L +L  CR S   K  E+  G +CA G
Sbjct: 89  LALQALKHCRESLPNKSIEIDMGNQCASG 117


>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
           phosphopantetheinyl transferase Lys7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 51  EMRCLIAICFIVLARHCESGALKCSP 128
           +M   +A+  I++ RH  S AL+CSP
Sbjct: 43  DMDAKMALASILIKRHLVSTALECSP 68


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 561 WRTGTEHIIEPKKECAPKTM-WKNECNTCW 647
           WRT  +H  +  K  +P+T+ W  EC+  W
Sbjct: 336 WRTWMKHKFK-LKTISPETLNWLKECDVTW 364


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 604 VRRRRCGKMNATRVGALRMVNPCALGWNASL 696
           VR +RC  + ++RV     V    +GWN++L
Sbjct: 286 VRLQRCAILKSSRVRDHAWVKSSIVGWNSTL 316


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 359 PGTSFQRDCNTCVCLDNGL 415
           P TSF  D N CV  D+GL
Sbjct: 236 PATSFIYDFNACVFCDDGL 254


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 74  LFYRFGATLRKWS 112
           +FYRFG ++R WS
Sbjct: 528 IFYRFGKSIRAWS 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,452,077
Number of Sequences: 5004
Number of extensions: 76031
Number of successful extensions: 247
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)