Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00943
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0896 + 22373348-22374946 34 0.11
01_01_0463 - 3424951-3425065,3425191-3425258,3425362-3425586,342... 31 0.75
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 31 1.00
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634... 31 1.3
08_01_1047 - 10616113-10616669,10616727-10616953,10617564-106176... 30 1.7
11_06_0345 + 22544825-22544921,22545751-22545773,22546604-225466... 30 2.3
06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796 30 2.3
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818... 29 4.0
05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355... 29 4.0
10_01_0161 + 1817783-1818862 29 5.3
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835 29 5.3
12_02_0428 - 18980002-18980075,18980201-18980434,18980508-189805... 28 7.0
12_01_0642 + 5414964-5415410,5415535-5416677 28 7.0
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687... 28 7.0
06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739 28 7.0
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 28 7.0
08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809... 28 9.3
07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484 28 9.3
02_04_0658 - 24793219-24794109 28 9.3
>07_03_0896 + 22373348-22374946
Length = 532
Score = 34.3 bits (75), Expect = 0.11
Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Frame = +3
Query: 96 HCESGA-LKCSPGTEGPCAAEQE--SKDKPSQITTDDASAVQEMQSEVECLAGTEWRATA 266
HC +GA CSPG PCA + D+P++ + A++ + L + + A
Sbjct: 70 HCTAGADPSCSPGAASPCALPPGAWAWDRPAETSVVSEWALKCAGPALVSLPASSFFAGC 129
Query: 267 TSAGALIQE-SPSA*GRTAVIKLYLLNLCVVSQAPPSRGIVTLASA*ITVWAYA 425
+ G L+ + S GR K+ L++L +S A G++T S VWAYA
Sbjct: 130 LAGGFLLTTLADSLLGRR---KMLLVSLASMSVA----GVLTAFSP--NVWAYA 174
>01_01_0463 -
3424951-3425065,3425191-3425258,3425362-3425586,
3425669-3425804,3425905-3426107,3426227-3426340,
3426432-3426506,3426625-3426783,3426868-3427038,
3427227-3427274,3427366-3427491,3427611-3427718,
3427800-3427913,3428320-3428496
Length = 612
Score = 31.5 bits (68), Expect = 0.75
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -1
Query: 593 WLDNVFSASSPLQMPYPSALHLQLLHWF 510
W N FS SSP MP+P HL H F
Sbjct: 102 WRTNKFSDSSPFSMPHPCDSHLWERHLF 129
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 31.1 bits (67), Expect = 1.00
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 135 EGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEWRATATSAGALIQESPSA*G 311
E P A ES+DK ++ +A E ++V ATAT + AL+++ A G
Sbjct: 642 EVPVTASSESEDKEPAAVPEEVAASSEKTADVAVAGAEASTATATISPALVKQLREATG 700
>01_05_0463 +
22461169-22461216,22463153-22463248,22463334-22463446,
22463479-22463494,22463939-22464031,22464118-22464261,
22464508-22464596,22464687-22464792,22464874-22464961,
22465585-22465703,22465788-22465952,22466235-22466404,
22466488-22466597,22466682-22466791,22466886-22466996,
22467082-22467183,22467266-22467471,22467563-22467881,
22467983-22468093
Length = 771
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/84 (21%), Positives = 34/84 (40%)
Frame = +2
Query: 92 ATLRKWSPKMQSWHRRPMCSRARIKRQTESDNNR*RVCRPRNAVGSGMPGGNRVESNCHF 271
A + +W P M++WH + +A++ Q ++ + G G+ E CH
Sbjct: 669 ADVSEWQPSMKNWHTKDY-EKAKVHLQCDNGQKITEIKFASFGTPQG-SCGSYTEGGCHA 726
Query: 272 CRCSDSGVAECLRQDSCDQIIFTE 343
+ D C+ Q+ C + E
Sbjct: 727 HKSYDIFWKNCVGQERCGVSVVPE 750
>08_01_1047 -
10616113-10616669,10616727-10616953,10617564-10617649,
10617949-10618080,10618867-10618959
Length = 364
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/73 (26%), Positives = 31/73 (42%)
Frame = -1
Query: 713 LLGSVISDAFHPSAHGFTIRSAPTRVAFIFPHRLRRTFFLWLDNVFSASSPLQMPYPSAL 534
LL S + + G ++ R AF FP + FF ++ S +P+ +
Sbjct: 220 LLAGYSSSSLYKLFKGAEWKNIALRTAFTFPGSVFAIFFFLNSLIWGQKSSGAVPFTTMF 279
Query: 533 HLQLLHWFATTIP 495
L LL WF ++P
Sbjct: 280 ALVLL-WFGISVP 291
>11_06_0345 +
22544825-22544921,22545751-22545773,22546604-22546690,
22546809-22546885,22547357-22547510
Length = 145
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 110 SPKMQSWHRRPMCSRARIKRQTESDNNR*RVCRPRNAVGSGMPGGNRVESNC 265
SP SW RR + A++KR E ++R + +G G N +NC
Sbjct: 6 SPPTASWSRRCRPATAQVKRIAEDPDDRSLDKSAKVVIGGGQDAMNVTMTNC 57
>06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796
Length = 478
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 87 LARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQ 212
+A E +K P +GP A S+ K ++ DDA AV+
Sbjct: 200 MAAAAEEVDVKSEPDLDGPACAPSSSRKKKRKMVDDDAIAVE 241
>09_04_0146 -
15080906-15081322,15081556-15081697,15081804-15081887,
15081982-15082039,15084038-15084572
Length = 411
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 120 CSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEWRATATS 272
CS TE P AA + D S+ D V + VEC++ RA AT+
Sbjct: 357 CSSSTEAPAAAAMDGADNHSKSMVKD-QEVNMICGLVECVSLEPSRARATT 406
>05_01_0445 +
3547176-3547577,3548625-3549557,3550246-3550524,
3550624-3550752,3550813-3550869
Length = 599
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 435 ASKEHRPRPLSKQTQVLQSLWKEVPG 358
+S + PR + +++Q++WKEVPG
Sbjct: 355 SSLDWGPRACHRTHEIIQAMWKEVPG 380
>10_01_0161 + 1817783-1818862
Length = 359
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 304 ALGDS*IRAPAEVAVALHSVPARHSTSDCISWTADASSV 188
A D+ IR P +V S+P R++ + W DA++V
Sbjct: 46 AADDNSIRLPRKVGRTASSLPLRYAAPQLLHWPDDAAAV 84
>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
Length = 379
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 571 PVRHYKCR-IHRHCTYNCYTGSPRRSRSAFSALDQLKLL 458
P + C+ +HRHC + TG RS F + D L+++
Sbjct: 160 PAAYEGCQAVHRHCYFLRTTGVDYRSEKMFMSKDYLEMM 198
>12_02_0428 -
18980002-18980075,18980201-18980434,18980508-18980594,
18981843-18981907,18982132-18982220,18982291-18982636,
18984011-18984019,18984378-18984544
Length = 356
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 529 YNCYTGSPRRSRSAFSALDQLKLLG 455
Y C+ G P ++ F +D++KL G
Sbjct: 273 YRCFFGKPSNDQAMFDEMDKVKLFG 297
>12_01_0642 + 5414964-5415410,5415535-5416677
Length = 529
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +3
Query: 114 LKCSPGTEGPC-AAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEWRATATSAGALI 287
L+C PG C +D PS +TT A + VE +A ++ G L+
Sbjct: 32 LRCVPGGAAACPVCATPWRDAPSPLTTSSIPAAYDDDDPVEPVATAARNSSGGGGGVLV 90
>09_06_0252 +
21867179-21867283,21868362-21868526,21868621-21868730,
21868802-21868904,21868998-21869110,21869204-21869357,
21869476-21870633
Length = 635
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/73 (26%), Positives = 30/73 (41%)
Frame = -1
Query: 713 LLGSVISDAFHPSAHGFTIRSAPTRVAFIFPHRLRRTFFLWLDNVFSASSPLQMPYPSAL 534
LL S + G + R AF+FP FF+ ++ S +P+ +
Sbjct: 384 LLAGYASSRLYKMFKGSEWKRITMRTAFLFPGIAFVIFFILNALIWGEKSSGAVPFTTMF 443
Query: 533 HLQLLHWFATTIP 495
L LL WF ++P
Sbjct: 444 ALVLL-WFGISVP 455
>06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739
Length = 135
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 576 EHIIEPKKECAPKTMWKNECNTCWCTSDGKPMCTRM 683
EHI K C P T +N N+C T + C ++
Sbjct: 21 EHIQVEAKSCCPSTTARNIYNSCRFTGASRDKCCKI 56
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 101 RKWSPKMQSWHRRPMCSRARIKRQTESDNNR 193
R+ S K W+R +R R+K T SD R
Sbjct: 577 RRRSTKFDRWNRTLQAARRRVKEDTMSDTGR 607
>08_02_0702 -
20179838-20180040,20180397-20180464,20180642-20180970,
20181058-20181258,20181369-20181501,20181576-20181619,
20181694-20181753,20181872-20181931,20182840-20182921,
20183292-20183368,20183649-20183726,20183997-20184143,
20184189-20184254,20184376-20184417,20184513-20184992
Length = 689
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 341 EPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKK 463
EP G F+ +TC+ G+GL + A + S P++
Sbjct: 42 EPASASGGGGFRGRISTCLRKSRGMGLLGMVASKSPSPPRR 82
>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
Length = 519
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -2
Query: 247 VPARHSTSDCISWTADASSVVI*LGLSFDSCSAAHGPSVPGLHFRAPLSQCR 92
+ RH+ D + D LGL ++C+ HG S P L + +C+
Sbjct: 277 IKTRHANKDVAGYGNDL------LGLMLEACAPEHGESCPQLSMDEIIDECK 322
>02_04_0658 - 24793219-24794109
Length = 296
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = -2
Query: 748 PGAHSLPWISSDFSGVLLVMHSILVHMGLPSEVHQHVLHSFFHIVFGAHSFFGSIMCSVP 569
PGA + P ++S+ S ++ S+LV LPS LH F ++F F + +
Sbjct: 167 PGALNNPKLTSNISLNASIVASVLVASRLPSR-----LHVFAIMLFSLQIFLFVPLVAFC 221
Query: 568 VRHYKCRIH 542
++ + R+H
Sbjct: 222 IKKFSLRLH 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,523,143
Number of Sequences: 37544
Number of extensions: 590727
Number of successful extensions: 1787
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1786
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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