Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00943
(758 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4) 36 0.027
SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085) 33 0.25
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 33 0.25
SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14) 31 0.77
SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0) 31 1.0
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0) 31 1.0
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83) 30 1.8
SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 30 1.8
SB_16910| Best HMM Match : EGF (HMM E-Value=0) 30 2.3
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14) 29 4.1
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_17940| Best HMM Match : Laminin_EGF (HMM E-Value=0.077) 29 5.4
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13) 28 9.5
SB_27440| Best HMM Match : DUF1707 (HMM E-Value=2.9) 28 9.5
>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
Length = 165
Score = 36.3 bits (80), Expect = 0.027
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -2
Query: 631 SFFHIVFGAH-SFFGSIMCSVPVRHYKCRIHRHCT--YNCYTGSPRRSRSAF 485
SF I H + + CS V++Y CR R C Y Y G PRR R +
Sbjct: 45 SFLFIKHKCHYKYHCYLKCSCKVKYYHCRYRRRCVWRYKYYHGKPRRYRHCY 96
>SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)
Length = 350
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 586 IMCSVPVRHYKCRIHRHCT--YNCYTGSPRRSRSAF 485
+ C V++Y CR R C Y Y G PRR R +
Sbjct: 124 LKCFCKVKYYHCRYRRRCVWRYKYYHGKPRRYRHCY 159
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 275 RCSDSGVAECLRQDSCDQIIFTEPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDAC 439
R + G +C+++ C I + + PG +DC CVC D L C+ C
Sbjct: 224 RVNAVGKVQCIKRKECPCIHDAKIYK--PGDKVYKDCQLCVCKDGQLTNCTGQKC 276
>SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14)
Length = 338
Score = 31.5 bits (68), Expect = 0.77
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Frame = +2
Query: 263 CHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPG-TSFQRDCNTCVCLDNGLGLCSLDAC 439
CH CS SG+ C + SC I + C+PG T +C C + G S A
Sbjct: 215 CHIDECS-SGINNCHQDASCANTIGSFACTCKPGYTGDGINCADC-AMGMESGAISDSAI 272
Query: 440 RRSSTPKKFELIQGR----ECAPGSSWRTSV 520
SS +K GR PG++ R +V
Sbjct: 273 TASSYLEKLRPSNGRLNDPSVFPGNTDRNTV 303
>SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 320
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 299 EC-LRQDSCDQIIFTEPVRCQPGTSFQRDC---NTCVCLDNGLGLCSLDACRRSSTP 457
EC +RQD+C +T P+ C P ++F D +TC D+ ++ C ++ P
Sbjct: 44 ECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCKAQDDQPTCVCVEPCPKTLKP 100
>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 974
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 431 DACRRSSTPKKFELIQGRECAPGS-SWRTSVTVVGAMPMDTAFVVANW 571
D R S+ K+F ++ GRE G+ W ++ V G+ A + +W
Sbjct: 711 DTQLRDSSDKRFRIVGGREAKAGAWPWLAAIYVKGSFRCGGALIARDW 758
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 299 EC-LRQDSCDQIIFTEPVRCQPGTSFQRDC---NTCVCLDNGLGLCSLDACRRSSTP 457
EC +RQD+C +T P+ C P ++F D +TC D+ ++ C ++ P
Sbjct: 1018 ECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCKAQDDQPTCVCVEPCPKTLKP 1074
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 610 GAHSFFGSIMCSVPVRHYKCRIHRHCTYNCY-TGSPRRSRSAFSALDQ 470
G H+ +G I S+P +H++ H + +N Y G PR +R + + +Q
Sbjct: 128 GYHNGYGQIGYSMPTQHHQFNNHTNNHFNMYPRGPPRITRVSLTVGEQ 175
>SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)
Length = 248
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 743 SAFSALDQLRLLGSVIS---DAFHPSAHGFTIRSAPTRVAFIFP 621
S FS +L L GS IS +HP HG TI SA ++ FP
Sbjct: 37 SRFSKKYRLLLHGSTISRLSKKYHPLLHGSTISSARNTISSSFP 80
>SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 621 WK-NECNTCWCTSDGKPMCTRMEC 689
WK ++C+TC+C +GK C C
Sbjct: 358 WKPDDCSTCFCKKNGKVECAHQMC 381
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +3
Query: 618 MWK-NECNTCWCTSDGKPMCTRMEC 689
MW+ ++C C C SD K CT+ C
Sbjct: 437 MWQQDDCTACICGSDRKLQCTKKTC 461
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 684 PS*CTWVYHPKCTNTCCIHFSTSSS 610
PS C W P CT+ CC S++
Sbjct: 961 PSSCAWTCAPDCTSECCARHKVSAA 985
>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
Length = 1552
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Frame = +2
Query: 365 TSFQRDCNTCVCLDNGLG----LCSLDACRRSSTPKKFELIQGRECAP 496
T+ + DCNTC C+ +C D C SST G C P
Sbjct: 1195 TTVKEDCNTCSCVHGTRTCTKVVCGPDNCLNSSTVSNDICSMGSVCVP 1242
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 615 TMWKNECNTCWCTSDGKPMCTRMECITNNTPEKSELIQGRECAPGS 752
T K +CNTC C G CT++ C +N S + C+ GS
Sbjct: 1195 TTVKEDCNTCSCV-HGTRTCTKVVCGPDNC-LNSSTVSNDICSMGS 1238
>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/87 (26%), Positives = 30/87 (34%)
Frame = +2
Query: 167 RQTESDNNR*RVCRPRNAVGSGMPGGNRVESNCHFCRCSDSGVAECLRQDSCDQIIFTEP 346
R S N R C + S N + C R + S + S EP
Sbjct: 213 RSNTSANTRANTCSNTSTYTSTNTRANTSSNTCADTRSNTSTSSYTGTNTSASYCRTPEP 272
Query: 347 VRCQPGTSFQRDCNTCVCLDNGLGLCS 427
RC P +F D C + NGL + S
Sbjct: 273 -RCPPLVNFSLDLPECFAIRNGLQVVS 298
>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 362 GTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELI-QGRE 487
G DCN+CVC G +C+ C SS K L+ QG +
Sbjct: 256 GAEIPTDCNSCVCA-CGRWVCTALDCNPSSNHVKASLVLQGEQ 297
>SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)
Length = 635
Score = 29.1 bits (62), Expect = 4.1
Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 10/102 (9%)
Frame = +2
Query: 242 GNRVESNCHFCRCSDS--GVAECLRQDSCDQIIFTEPVRCQPGTSFQRDC-NTCVCLD-- 406
G R E C D V +C+ +CD + RC GT + DC C C D
Sbjct: 209 GKRCERPCDSGYYGDECKRVCQCMNGATCDHVTGRCDQRCPVGT-YGFDCAKVCACADTE 267
Query: 407 -----NGLGLCSLDACRRSSTPKKFELIQGRECAPGSSWRTS 517
+G C +C SS P P +SWR S
Sbjct: 268 KCSVVSGECTCIAGSC-SSSCPCAGNATCEEAHPPFASWRNS 308
>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/57 (36%), Positives = 26/57 (45%)
Frame = +2
Query: 128 WHRRPMCSRARIKRQTESDNNR*RVCRPRNAVGSGMPGGNRVESNCHFCRCSDSGVA 298
W RRPM R+R R + SD R V R R A + + SN DSGV+
Sbjct: 1078 WVRRPMPQRSRFTR-SSSDGVRQLVMRSRQASVTSCDRRISICSNGSLNESEDSGVS 1133
>SB_17940| Best HMM Match : Laminin_EGF (HMM E-Value=0.077)
Length = 816
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 111 ALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEWRAT 263
+LK +PG E A K+KP + D ++++E QSEV +A T + T
Sbjct: 510 SLKETPG-EDRAIAIISLKEKPGKYRAIDITSLKETQSEVRNIAITSMKET 559
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -3
Query: 726 GSAQTSRECY**CIPS*CTWVYHPKCTNTCCIHFSTSSSAHI 601
GSA TS +C PS C P C CC+ TS +
Sbjct: 1897 GSAPTSSQC-----PSSCLLACQPSCPMECCLAAFTSKPVEV 1933
>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 99 CESGALKCSPGTEGPCAAEQESKDKPSQITTDDASA---VQEMQSEVECLAGTEWRATAT 269
CE + + T A Q+ +KPS T+ +A S E L T++ ATA+
Sbjct: 1214 CEESSCNKAYTTAANLRAHQKRHEKPSPATSSKKTADPTTSTFDSGAETLH-TDY-ATAS 1271
Query: 270 SAGALIQESPSA 305
SAG+L+ SA
Sbjct: 1272 SAGSLVDSDISA 1283
>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
Length = 1072
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +3
Query: 90 ARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEWRATAT 269
A+H G K P E P A Q + KP ++ D +SA +Q+ + + ++
Sbjct: 393 AQHLHPGHNKTLPMQEDPAIATQPVQPKPQEV--DSSSAGSSVQTSNDSSPAPQEDDKSS 450
Query: 270 SAGALIQESPSA 305
SA + PS+
Sbjct: 451 SATEEYKSEPSS 462
>SB_27440| Best HMM Match : DUF1707 (HMM E-Value=2.9)
Length = 916
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 135 EGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEWRATATSAGALIQES 296
E P AE+E DKP + D Q+ + ++ +W+A + G+L +++
Sbjct: 811 ESPALAEKERHDKPLEKYQQDYGRYQQRRQKI-----LDWQAQSRERGSLAKQN 859
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,046,956
Number of Sequences: 59808
Number of extensions: 685469
Number of successful extensions: 2059
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2056
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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