Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00943
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur s...    29   2.5  
At5g60380.1 68418.m07572 hypothetical protein many predicted pro...    28   7.7  
At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur s...    28   7.7  
At2g24170.1 68415.m02888 endomembrane protein 70, putative simil...    28   7.7  

>At5g40650.1 68418.m04935 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-2) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-2) [gi:12049600] from Arabidopsis thaliana
          Length = 280

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/62 (35%), Positives = 27/62 (43%)
 Frame = +1

Query: 415 GPMLLGCL*KIVNSQEV*ADPGQRMRSGIVVANQCNSCRCNADGYGICSGELALNTLSSQ 594
           GPM+L  L KI N  +      +  R GI     C SC  N DG   C+G   L  + S 
Sbjct: 77  GPMVLDALIKIKNEMDPSLTFRRSCREGI-----CGSCAMNIDG---CNGLACLTKIESG 128

Query: 595 RK 600
            K
Sbjct: 129 SK 130


>At5g60380.1 68418.m07572 hypothetical protein many predicted
           proteins, Arabidopsis thaliana contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 373

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 592 GSIMCSVPVRHYKCRIHRHCTYNC 521
           GS+ C+VP+R +K  I  + TY+C
Sbjct: 24  GSVQCTVPLRSFK--ISENVTYDC 45


>At3g27380.1 68416.m03423 succinate dehydrogenase, iron-sulphur
           subunit, mitochondrial (SDH2-1) nearly identical to
           mitochondrial succinate dehydrogenase iron-sulphur
           subunit (sdh2-1) [gi:12049598] from Arabidopsis thaliana
          Length = 279

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +1

Query: 415 GPMLLGCL*KIVNSQEV*ADPGQRMRSGIVVANQCNSCRCNADGYGICSGELALNTLSSQ 594
           GPM+L  L KI N  +      +  R GI     C SC  N DG   C+G   L  +  +
Sbjct: 78  GPMVLDALIKIKNEMDPSLTFRRSCREGI-----CGSCAMNIDG---CNGLACLTKIQDE 129


>At2g24170.1 68415.m02888 endomembrane protein 70, putative similar
           to  MURA transposase of maize Mutator transposon
          Length = 637

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/73 (23%), Positives = 32/73 (43%)
 Frame = -1

Query: 713 LLGSVISDAFHPSAHGFTIRSAPTRVAFIFPHRLRRTFFLWLDNVFSASSPLQMPYPSAL 534
           LL    S   + +  G   +    + AF+FP  +   FF+    ++   S   +P+ +  
Sbjct: 386 LLAGYASSRLYKTLRGTEWKRNALKTAFMFPATVFVAFFVLNAIIWGQKSSGAVPFGTMF 445

Query: 533 HLQLLHWFATTIP 495
            L +L WF  ++P
Sbjct: 446 ALVVL-WFGISVP 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,769,518
Number of Sequences: 28952
Number of extensions: 433125
Number of successful extensions: 1318
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)