Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00942
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    28   0.088
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   2.5  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   3.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   3.3  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   7.6  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   7.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 27.9 bits (59), Expect = 0.088
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 382 PNPESWCPNPESCPKLPNPESWCPNPESCPKLPNPESRPKPPNQS 248
           P  E+  P P   P   +P S   +P +C  LPN     +  + S
Sbjct: 48  PEEEAASPTPGDVPTPSSPRSISEDPLNCRDLPNSRCNSRESSDS 92



 Score = 25.8 bits (54), Expect = 0.35
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -3

Query: 370 SWCPNPESCPKLPNPESWCPNPESCPKLPNPESRPKPPNQSHD 242
           S  PN  + P  P  E+  P P   P   +P S  + P    D
Sbjct: 36  SMTPNSAASPAPPEEEAASPTPGDVPTPSSPRSISEDPLNCRD 78


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -3

Query: 328 PESWCPNPESCPKLPNPESRPKPPNQSHDRNYRI 227
           P S  P P  CP +  P  +  P + S   N  +
Sbjct: 23  PHSPEPYPPRCPPIYEPSCQYSPVSNSDSENSEV 56


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 150 IVVSSKTKAFF*SSCYSF 97
           IV SSK +A   SSC SF
Sbjct: 115 IVASSKLRASLISSCLSF 132


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 361 PNPESCPKLPNPESWCPNPESCPKLPNPESR 269
           P P + PK+P  E    +  S  + PNP SR
Sbjct: 207 PKP-TVPKIPPAEFPTTSSSSALESPNPASR 236


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 343 PKLPNPESWCPNPESCPKLPNPESR 269
           PK+P  E    +  S  + PNP SR
Sbjct: 1   PKIPPAEFPTTSSSSALESPNPASR 25


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 343 PKLPNPESWCPNPESCPKLPNPESR 269
           PK+P  E    +  S  + PNP SR
Sbjct: 1   PKIPPAEFPTTSSSSALESPNPASR 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,716
Number of Sequences: 336
Number of extensions: 3526
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)