Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00942
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    40   5e-04
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    37   0.003
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    34   0.023
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    29   0.88 
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    27   3.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   3.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.7  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   4.7  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    26   4.7  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   6.2  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   6.2  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   8.2  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   8.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
 Frame = -3

Query: 508  ISFTCPALSLPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPN 329
            +S   P + LP   SA++P +P P +  P      P P S  P P+S    P + P +P 
Sbjct: 1017 LSSKAPPVPLP---SADAPPIPVPSTAPP-----VPIPTSTPPVPKSSSGAPSAPPPVPA 1068

Query: 328  PESWCPN---PESCPKLPNPESRPKPPNQS 248
            P S  P+   P   P +P P   P  P  S
Sbjct: 1069 PSSEIPSIPAPSGAPPVPAPSGIPPVPKPS 1098



 Score = 33.9 bits (74), Expect = 0.023
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = -3

Query: 481  LPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPE 302
            +PKLSS ++P +P P +  P      P+     P P S  P P+S    P+     P P 
Sbjct: 1014 VPKLSS-KAPPVPLPSADAPPIP--VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPS 1070

Query: 301  S-CPKLPNPESRPKPPNQS 248
            S  P +P P   P  P  S
Sbjct: 1071 SEIPSIPAPSGAPPVPAPS 1089


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = -3

Query: 484 SLPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNP 305
           S P   + +S   P P S  P P    P+P S  P P    P P S P    P +   +P
Sbjct: 126 SAPAPPTPQSELRP-PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184

Query: 304 ESCPKLPN--PESRPKPP 257
            S P LP+  P   PK P
Sbjct: 185 PSAPSLPSAVPPMPPKVP 202


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 400  NPESWCP-NPESWCPNPESCPKLPNPESWCPNPESCPKLP-NPESRPKPP 257
            +P S  P  P+S  P   S P  P P    P P S P +P  P S P PP
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 29.5 bits (63), Expect = 0.51
 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = -3

Query: 442  NPESWCP-NPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPESCPKLPNP-ESR 269
            +P S  P  P+S  P P+   P P    P P S P  P+       P S P  P P  S 
Sbjct: 1685 HPVSTPPVRPQSAAP-PQMSAPTPP---PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSA 1740

Query: 268  PKPPNQSHDRNYRIQ 224
            P  PN   DR+  +Q
Sbjct: 1741 PSVPNPG-DRSALLQ 1754



 Score = 29.5 bits (63), Expect = 0.51
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 606  PPMAVPIPPNEVAMPSRPFSILSSSIPWSAKLEYP 502
            PPM+VP PP+   MP+ P S     +P S+    P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = -3

Query: 481 LPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPE 302
           +P L  +E PKL        N       P S      +  PNP+S  +L   ES  PN E
Sbjct: 223 IPFLGESEIPKLLANVEPSANAHGLGIEPAS---KASASSPNPQSGTRLGTKESVAPNNE 279

Query: 301 SC---PKLPNPESRP 266
                P L NP + P
Sbjct: 280 GSSNPPSLVNPPTDP 294


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
 Frame = -3

Query: 466 SAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCP-NPESCPK 290
           S+ S  LPN  +   N     P   S   N  S  P P + P    P SW P N  +   
Sbjct: 39  SSSSSTLPNYAASSLNSR---PVSSSGSGNAYSQAPYPPARPTSQRPNSWQPGNASTMYA 95

Query: 289 LPNPESR---PKPPNQS 248
            P P S     KPP Q+
Sbjct: 96  SPPPSSNYNTAKPPYQT 112


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
 Frame = -3

Query: 493 PALSLPKLS--SAESPKLPNPESWCPNPES-WCPNPESWCPNPE-SWCPNPESCPKLPNP 326
           P++  P ++  + E P +P   +    PE+   P P +    PE    P   + P +P  
Sbjct: 602 PSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEA 661

Query: 325 ESWCPNPESCPKLPNPESRPKPP 257
            S  P P + P +P   S P+PP
Sbjct: 662 PS-VPQPPAAPVVPEVPSVPQPP 683



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 361 PNPESCPKLPNPESWCPNPESCPKLPNPESRPKPP 257
           P P   P  P   S  P P   P +P   S P+PP
Sbjct: 575 PQPPVAPVAPEVPS-VPQPPVAPVVPEAPSVPQPP 608


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -3

Query: 502 FTCP--ALSLPKLSSA--ESPKLPNPESWCPNPESWCPNPESWCPNPESW 365
           +T P  A+ +P L  A  +S   P PE++  NP+ W PN  +   +P++W
Sbjct: 403 YTVPKDAMVIPTLYGALHDSKVYPEPETF--NPDRWAPNGLAE-QSPKNW 449


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -2

Query: 341 EATESRVVVSKSRIVPEASESGVTSKATEPESRPKLSN 228
           +ATE+    SK+++    +ES V SKA   +SR KLS+
Sbjct: 461 QATENNNTPSKAKV---KAESKVRSKAKSDKSRAKLSS 495


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = -3

Query: 463 AESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPESCPKLP 284
           A SP++P   ++ P      P P    P P +  P   +  +LP P     N  S   +P
Sbjct: 218 AVSPEIP--PTYTPKQADPLPAPPP--PPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIP 273

Query: 283 NPESRP-KPPNQSHDRNYRIQG 221
            P + P +PP    + + R  G
Sbjct: 274 PPPATPSQPPRPPTNASTRSTG 295


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
 Frame = -3

Query: 505 SFTCPALSLPKLSS----AESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPK 338
           S  C A  +PK  S    +E     +PE       S C +P    P+  S CPN    PK
Sbjct: 259 SSNCSARRVPKFDSKGTVSEQSNSDSPELSADKVLSHC-SPIDARPSTPS-CPNASISPK 316

Query: 337 LPN 329
            PN
Sbjct: 317 TPN 319


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = -3

Query: 475 KLSSAESPK-LPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPES 299
           K + A++ K L  P+     P    P P+      ES   + +  P    PE   P P+ 
Sbjct: 136 KTADADAAKDLSTPQD-SSKPIEEKPMPDLGAEQKESAPSSTKPAPDAKEPEFSSPKPKP 194

Query: 298 CPKLPNPESRPK 263
               P  +S+PK
Sbjct: 195 AKSEPVKQSKPK 206


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 105 YSFDFTASINIATAMREGLCYCKY 34
           Y+F+ TA       M+E LCY  Y
Sbjct: 198 YAFNRTADFETVREMKEKLCYVSY 221


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 328 PESWCPNPESCPKLPNPESRPKPPNQ 251
           P +  PNP S   L  P  + KPP+Q
Sbjct: 353 PNATLPNPPSSELLTTPFQQIKPPSQ 378


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 283 NPESRPKPPNQSHDRNYRIQGCDFQS 206
           +P + P PP + HDR+++    +++S
Sbjct: 44  HPSNPPPPPTRLHDRSFKPVSKNYES 69


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 301 SCPKLPNPESRPKPPNQSHDRNYRIQGCDFQSR 203
           SC +L  PES   PP+ S  R+  I  C    R
Sbjct: 353 SC-RLTKPESSSVPPSSSISRSSTIHSCTSSKR 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,034
Number of Sequences: 5004
Number of extensions: 55835
Number of successful extensions: 235
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)