Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00942
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect(2) = 1.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 295  PKLPNPESRPKPPNQSHDRN 236
            P   +PE  P PP ++HD+N
Sbjct: 1852 PVSGSPEPPPPPP-RNHDQN 1870



 Score = 20.6 bits (41), Expect(2) = 1.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 196  RNHDQNCRSRYDQNQNCRI 140
            RNHDQN  S  D  ++  I
Sbjct: 1865 RNHDQNNSSFNDSKESNEI 1883


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 384 VQIRSHGVQIRSHARSYR--IQSRGVQIQNRARSFRIRSHVQSHRT 253
           ++I S G  +R     +   +QS G+  +     FR+  H Q H T
Sbjct: 154 IEIESFGYTMRDIRYKWNAGLQSVGISNEVELPQFRVLGHRQRHST 199


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 342 RSYRIQSRGVQIQNRARSFRIRSHVQSHRTRVTTETIESR 223
           R Y +    + +    R+FR+RS V+    R+  + I  R
Sbjct: 491 RKYAMLKLKIVLSTILRNFRVRSDVKESEFRLQADIILKR 530


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -3

Query: 280 PESRPKPPNQSHDRNYRIQGCDFQSRQIRNHDQNCRSRYDQNQNCRI 140
           PE R  P  QSH   +  Q    QS  +   + +   RY ++ N +I
Sbjct: 62  PEHRDLPIYQSHHHLHHHQVLYQQSPYLMYENPDEEKRYQEHPNGKI 108


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 382 PNPESWCPNPESCPKLPNPESWCPNPESCPKLPNPESRPKPPN 254
           P P        S P LP P S    P+S  + PN ++ P  P+
Sbjct: 639 PLPPKRIRKMPSMPLLPRPISCHTTPDSFIEAPN-KTLPSLPS 680


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 364 CPNPESCPKLPNPE 323
           CP   +CP  PNP+
Sbjct: 213 CPPTLACPLNPNPQ 226



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 316 CPNPESCPKLPNPE 275
           CP   +CP  PNP+
Sbjct: 213 CPPTLACPLNPNPQ 226


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 3   GTENYLLYFGCTCSSTSLP 59
           GT +   Y GC  +S S+P
Sbjct: 789 GTSSITKYTGCELTSESMP 807


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 3   GTENYLLYFGCTCSSTSLP 59
           GT +   Y GC  +S S+P
Sbjct: 879 GTSSITKYTGCELTSESMP 897


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,868
Number of Sequences: 438
Number of extensions: 4747
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)