Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00941
         (488 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   1.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   2.0  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    23   2.0  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -1

Query: 251 KFSNSMKA-KPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPP 105
           KF  S ++ KP G  +T T    P LSN    +     ++   + T +PP
Sbjct: 114 KFETSFESGKPSGVISTNTSPPSPILSNRFGENEEADAASNVISSTPLPP 163


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 221 GGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTY 120
           GG SA++ + +  +LS+       L PS  PP++
Sbjct: 93  GGISASKRQRTDDWLSSPSGNVPPLTPSPGPPSH 126


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 293 LSTIHRATRIFRLCKFSNSMKAKPGGFSATQTE 195
           LST++  T  F LCK S  +KA   G  +   E
Sbjct: 396 LSTVYWFTVEFGLCKESGVVKAYGAGLLSAYGE 428


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 258 AEDACSAMNGTEMLGATLKVEISRK 332
           A D C+  N T++L   LK++I ++
Sbjct: 213 ASDLCNEANKTKILLVGLKIDIDQE 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,596
Number of Sequences: 336
Number of extensions: 1694
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)