Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00941
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 34 0.013
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.017
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 33 0.031
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 32 0.053
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 30 0.16
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.16
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 30 0.16
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.22
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.50
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.66
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 0.87
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 1.1
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.5
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 2.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.0
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 3.5
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 26 3.5
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 4.6
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 6.1
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 25 6.1
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 6.1
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 33.9 bits (74), Expect = 0.013
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +1
Query: 100 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQRRKMRVAR 279
++ V++G L ++++E F K+GK+ + + L+ AF+ F N+ R ++V R
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI-LSKKNIAFVHFLNI-RDAIKVVR 352
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.5 bits (73), Expect = 0.017
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSV 201
R+YVGGL I+ DLE F ++G ++++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNL 34
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 32.7 bits (71), Expect = 0.031
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQRRKMRVA 276
+++ L K+ D+EREF +YG + + V N G+AF+ FE + R ++VA
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE--RERDLKVA 157
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.9 bits (69), Expect = 0.053
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 243
VYVG + + E+L+ F G +N V + + P GFA+IEF
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEF 103
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 30.3 bits (65), Expect = 0.16
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFEN 249
R+++ L ++DL+ F +G+L V + + NP GFA+I+F +
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
Score = 27.1 bits (57), Expect = 1.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA----LNPPGFAFIEF 243
GT++ + L K+D++ YG+L SV V + GFAF EF
Sbjct: 720 GTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEF 768
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 30.3 bits (65), Expect = 0.16
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENL 252
+YV L G + F YG + +W+ L+P A + +E+L
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM-LSPDNSAIVSYESL 45
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 30.3 bits (65), Expect = 0.16
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +1
Query: 94 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEF 243
+M T V+VGGL + ++DL+ F +G++ ++ + G F+++
Sbjct: 291 SMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFG-KGCGFVQY 339
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.22
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 206 TQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPPE 102
T+ +FPYL NSR+R S + P+ VPPE
Sbjct: 329 TEYRIAFPYLYNSRAR-SVALSEYHQPSNVFVPPE 362
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 28.7 bits (61), Expect = 0.50
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 151 KEDLEREFD-KYGKLNSVWVALNPPGFAFIEFEN 249
++D++ E D KYGK+ + V N G F++FEN
Sbjct: 530 EQDVKEECDEKYGKVVHIAVVPNELGQIFVKFEN 563
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.66
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVW 204
+YVG + + E++ + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 0.87
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQRRKMRVA 276
V+VG L + + L +EF++YG + V ++ G+ +++FE + K VA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVA 322
Score = 26.2 bits (55), Expect = 2.7
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +1
Query: 97 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQRR 261
+S V+VG L ++DL F G + S+ + +P GF ++ F ++
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSA 420
Query: 262 K 264
K
Sbjct: 421 K 421
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 210 TKSPR-FRFHRI*ELAEAEDACSAMNGTEMLGATLKVE 320
+KSP F F A++A +++NG+ G TLKVE
Sbjct: 62 SKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQRRK 264
++VG L G+ + F YG ++S+ + L+ AF+ F++++ K
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRM-LSHKHSAFLNFDSVETAK 636
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 26.6 bits (56), Expect = 2.0
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFEN 249
+YV G +G++ +L EF+ +G L + + FAF+E+E+
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYED 56
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 242 NSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVP 108
+S+ S+ + +S P SNS + S+ +I S +YT +P
Sbjct: 793 SSISTSVSSQSSMNSSYSSPISSNSVTSSTSIISSIASSSYTSIP 837
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 151 KEDLEREFDKYGKLNSVWVAL 213
KE++E EF+ YGK + V VAL
Sbjct: 435 KEEVEIEFELYGKNDDVNVAL 455
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +1
Query: 103 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQRRKM 267
+ G V+VG + + ++ + F++ G + + + L+P G+ F EF + + M
Sbjct: 4 TAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAM 63
Query: 268 RVAR 279
V +
Sbjct: 64 AVRK 67
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 4.6
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
TR++VG + +ED+ F YG++ + +N GF F+E E+
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKL-MN--GFGFVEVED 46
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 6.1
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Frame = +1
Query: 97 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQ 255
M+S T ++V L K++DL F G + V NP G+ F+ F L+
Sbjct: 1 MNSNST-LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE 57
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 6.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Frame = +1
Query: 154 EDLEREFDKYGKLNSVWVALNPP-----GFAFIEFEN 249
EDLE F ++GK+ S V + +AFIEF+N
Sbjct: 258 EDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDN 294
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -3
Query: 315 LSKWRLTSQYHSSRYTHLPPLQVLKFYESETWG 217
L+ WR Y S+ ++ P++ L + WG
Sbjct: 1169 LATWRALHNYPKSKVVYIAPMKALVKERVKDWG 1201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,529,640
Number of Sequences: 5004
Number of extensions: 27845
Number of successful extensions: 102
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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