Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00941
(488 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 64 8e-11
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 6e-10
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 3e-09
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 39 0.003
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 38 0.006
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 35 0.041
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.055
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.072
SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.096
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.096
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 33 0.13
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 33 0.17
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.67
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 30 0.89
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 30 1.2
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 1.2
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19) 29 1.6
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 29 2.7
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 29 2.7
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 28 4.7
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 28 4.7
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 63.7 bits (148), Expect = 8e-11
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
T++YVG L +LER F+K+G+L+ VWVA NPPGFAF+E+E+
Sbjct: 4 TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYED 49
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 60.9 bits (141), Expect = 6e-10
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
+RVY+G + + K ++EREF+ +G L VWVA NPPGFAF FE+
Sbjct: 2 SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFED 47
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 58.4 bits (135), Expect = 3e-09
Identities = 24/46 (52%), Positives = 31/46 (67%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
T+VY+G L + K ++E EF YG L VWVA NPPGFAF F++
Sbjct: 32 TKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNPPGFAFCIFDD 77
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Frame = +1
Query: 100 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFEN 249
+S RVYVG L + ++++DL F KYG + V + PP FAF+EFE+
Sbjct: 257 NSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPP-FAFVEFED 309
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 37.5 bits (83), Expect = 0.006
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
+++VGGL KE L+ F KYG+L V + ++ P GFAF++F++
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKH 79
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 34.7 bits (76), Expect = 0.041
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
RVY+G L G ++D+ R F YG+L + + N + F+EFE+
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKNN---YGFVEFED 45
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 255 EAEDACSAMNGTEMLGATLKVEISR 329
+A+DA NG EMLG + VE SR
Sbjct: 48 DADDAVYECNGKEMLGERILVEHSR 72
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 34.3 bits (75), Expect = 0.055
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 103 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
S TRVY G L ++ DLE+ YG++ + + L G+ F+EF++
Sbjct: 2 SRSTRVYFGRLPRDCRERDLEKFVRGYGRVREISMKL---GYGFVEFDD 47
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 33.9 bits (74), Expect = 0.072
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 201
TR++VGGL I +LEREFD++G + +
Sbjct: 318 TRLWVGGLGPWISIPELEREFDRFGAIRRI 347
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENL 252
++VG L GI +DL F+K+G + V + G +AF++F +L
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADL 287
>SB_51896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 33.5 bits (73), Expect = 0.096
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 97 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
M+S GT+++VG L + K DLE F YGKL + + FIE+E+
Sbjct: 1 MASRGTQLFVGRLSKETKLRDLENVFYLYGKLLRCDL---KTAYGFIEYED 48
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 33.5 bits (73), Expect = 0.096
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQRRK 264
T VYVG L +K +L++ F +YG + V + G+AFI +RR+
Sbjct: 615 TTVYVGNLPPDVKDYELQQMFSQYGSILETKVFAD-KGYAFINARGEKRRQ 664
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFE 246
RVY+G L G +++D+++ F YG+ + L G+ F+EF+
Sbjct: 4 RVYLGRLPYGTREDDVKKFFYTYGRFKIREIILK-DGYGFVEFD 46
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 32.7 bits (71), Expect = 0.17
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSV 201
++VG L E I++ED+ + F +YG++ SV
Sbjct: 8 LWVGNLPENIREEDIVKHFTRYGRVESV 35
Score = 30.3 bits (65), Expect = 0.89
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSV 201
++VGG+ + ++ +ER F +YG++ V
Sbjct: 330 IWVGGVTNSLSEQQVERHFGRYGRVTKV 357
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Frame = +1
Query: 106 GGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG--FAFIEFENLQ-----RR 261
G TR ++VG + + DL+ F++YG++ V + P +AF++F L RR
Sbjct: 246 GCTRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARR 305
Query: 262 KM 267
KM
Sbjct: 306 KM 307
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 31.1 bits (67), Expect = 0.51
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = -1
Query: 347 AGPVPLSRDLYFQSGA*HLSTIHRATRIFR---LCKFSNSMKAKPGGFSATQTEFSFPYL 177
+ P+ S LY S S +++++ +++ LCK S+ K+ P S++ + S+ Y
Sbjct: 718 SSPLYKSSSLYKSSSLYKSSALYKSSPLYKCSSLCKSSSLYKSSPLHKSSSLYKSSYLYK 777
Query: 176 SNSRSRSSFLIPST 135
S+ +SSFL S+
Sbjct: 778 SSYLYKSSFLYKSS 791
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 31.1 bits (67), Expect = 0.51
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQRRKMRVA 276
VYVG L + DL + F++YGK+ V + + G AFI F + Q + VA
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVA 69
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 30.7 bits (66), Expect = 0.67
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQRRKMRVA 276
R+Y+ + + ++D++ F+ +GK+ ++ P G+ FIE+EN Q +A
Sbjct: 200 RIYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIA 258
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 30.3 bits (65), Expect = 0.89
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 115 RVYVGGLV-EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQRRKMRVAR 279
R+++G L + I ++DLE F ++GK+ + N F F++FE + VA+
Sbjct: 47 RIFIGNLATDKIARQDLEEIFSRHGKVLGCSLHAN---FGFVQFETEKGADEAVAK 99
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSV 201
V+VG L +KK+ L++ F KYG++ SV
Sbjct: 23 VFVGNLPLTLKKKALKKYFSKYGEVESV 50
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 127 GGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
GGL+ G+ +E + R F YG L V V L ++F+ +++
Sbjct: 55 GGLMCGVDRESITRVFSLYGTLERV-VMLPQRSYSFVSYKS 94
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSV 201
T +YVGGL + ++DL F ++G+L S+
Sbjct: 304 TTLYVGGLEGKVTEQDLRDHFYQFGELRSI 333
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 100 SSGGTRVYVGGLVEGIKKEDLEREFDKYG 186
S+ +V++GGL G +EDL+ F YG
Sbjct: 198 SANDGKVFIGGLAFGTTEEDLKEYFSTYG 226
>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
Length = 486
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 225
VYVG + + K+D+ R F KYG + V V G
Sbjct: 372 VYVGKISDETHKDDVWRRFRKYGPIEKVTVHFRDNG 407
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKL 192
+V++G L G+K D+ F KYG +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +1
Query: 106 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 243
G T + V L EDL++ F KYG L +++ + GFAF+ F
Sbjct: 14 GMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRF 64
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 28.7 bits (61), Expect = 2.7
Identities = 8/27 (29%), Positives = 20/27 (74%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLN 195
++++GGL +ED+++ F ++GK++
Sbjct: 184 KIFIGGLSTNTSEEDMKKYFSQFGKVS 210
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 243
T++YV L + K+ ++ F YG++ +V + + GFA++E+
Sbjct: 1157 TKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEY 1205
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFEN 249
T +Y+ GL +DL R KYG + S L+ G+ F++FE+
Sbjct: 100 TNLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFES 150
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 255 EAEDACSAMNGTEMLGATLKVE 320
EA+ A A+NG EMLG + V+
Sbjct: 346 EAQSALEALNGAEMLGQNISVD 367
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Frame = +1
Query: 115 RVYVGGLVEGIKKED--------LEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
+++VGGL E KED LE + DK + GFAF+E N
Sbjct: 109 KIFVGGLPEDATKEDIQEAIESLLEEKVDKVDLIMKKEDETKHRGFAFVELNN 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,156,469
Number of Sequences: 59808
Number of extensions: 207767
Number of successful extensions: 499
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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