Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00941
(488 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 60 1e-09
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 60 1e-09
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 60 1e-09
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 40 0.001
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 40 0.001
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 36 0.012
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 36 0.016
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 36 0.016
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 36 0.016
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 36 0.016
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 35 0.036
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 35 0.036
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 33 0.084
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 32 0.26
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 32 0.26
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 32 0.26
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 31 0.34
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 31 0.34
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 31 0.34
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 31 0.34
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 31 0.34
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 31 0.34
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 31 0.34
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 31 0.45
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 31 0.59
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 31 0.59
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 30 0.78
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 30 0.78
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 30 0.78
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 29 1.4
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 29 1.8
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 29 1.8
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 1.8
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 29 1.8
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 1.8
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 29 1.8
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 28 4.2
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 28 4.2
U40953-6|AAB52651.1| 809|Caenorhabditis elegans Hypothetical pr... 27 5.5
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 27 7.3
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 27 9.7
U88175-6|AAB42283.1| 234|Caenorhabditis elegans Hypothetical pr... 27 9.7
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 27 9.7
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 59.7 bits (138), Expect = 1e-09
Identities = 22/47 (46%), Positives = 35/47 (74%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQ 255
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E+++++
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVR 50
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 59.7 bits (138), Expect = 1e-09
Identities = 22/47 (46%), Positives = 35/47 (74%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQ 255
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E+++++
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVR 50
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 59.7 bits (138), Expect = 1e-09
Identities = 22/47 (46%), Positives = 35/47 (74%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQ 255
+VYVGGL ++LE FD++G++ VWVA PPGFAF+E+++++
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVR 50
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Frame = +1
Query: 97 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-ALNPPGFAFIEFEN 249
M GG+ +VYVG L ++++++E F KYG++ V + + P FAF+EFE+
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFED 55
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 195 LSLGSTKSPRFRFHRI*ELAEAEDACSAMNGTEMLGATLKVEISR 329
+ + S + P F F + +AEDA A +G E G ++VE +R
Sbjct: 38 VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Frame = +1
Query: 97 MSSGGT---RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-ALNPPGFAFIEFEN 249
M GG+ +VYVG L ++++++E F KYG++ V + + P FAF+EFE+
Sbjct: 1 MPRGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFED 55
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 195 LSLGSTKSPRFRFHRI*ELAEAEDACSAMNGTEMLGATLKVEISR 329
+ + S + P F F + +AEDA A +G E G ++VE +R
Sbjct: 38 VDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 36.3 bits (80), Expect = 0.012
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 160 LEREFDKYGKLNSVWVALNPPGFAFIEFE 246
+E F G + S+W+A PPGFAF+ F+
Sbjct: 44 IEAVFSVMGPIKSIWMAKRPPGFAFVTFK 72
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 35.9 bits (79), Expect = 0.016
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
R+Y+G L + ++D+E F YG++ V L GF F+EF++
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDD 45
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 35.9 bits (79), Expect = 0.016
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
R+Y+G L + ++D+E F YG++ V L GF F+EF++
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDD 45
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 35.9 bits (79), Expect = 0.016
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
R+Y+G L + ++D+E F YG++ V L GF F+EF++
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDD 45
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 35.9 bits (79), Expect = 0.016
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
R+Y+G + ++ D+ER YGK+N++ + GFAF++FE+
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFED 44
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 35.9 bits (79), Expect = 0.016
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
R+Y+G + ++ D+ER YGK+N++ + GFAF++FE+
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFED 44
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 35.9 bits (79), Expect = 0.016
Identities = 16/45 (35%), Positives = 29/45 (64%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
R+Y+G + ++ D+ER YGK+N++ + GFAF++FE+
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFED 44
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.036
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 94 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQR 258
T + +++VGG+ + EDL F +YG++ V + GFAF+EF +
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEG 82
Query: 259 RKMRVA 276
K+ +A
Sbjct: 83 CKLALA 88
Score = 31.1 bits (67), Expect = 0.45
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSV-W----VALNPPGFAFIEFE 246
+V+VGGL ++DL F+++GK++ + W FAFI FE
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFE 159
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 34.7 bits (76), Expect = 0.036
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 94 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQR 258
T + +++VGG+ + EDL F +YG++ V + GFAF+EF +
Sbjct: 23 TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEG 82
Query: 259 RKMRVA 276
K+ +A
Sbjct: 83 CKLALA 88
Score = 31.1 bits (67), Expect = 0.45
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSV-W----VALNPPGFAFIEFE 246
+V+VGGL ++DL F+++GK++ + W FAFI FE
Sbjct: 111 KVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFE 159
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 33.5 bits (73), Expect = 0.084
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
RVY+G L D+E F YGKL+ V + GF F++F++
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV---IMKNGFGFVDFQD 44
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 31.9 bits (69), Expect = 0.26
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +1
Query: 103 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 243
SG VYVG +E+L F G++N+V + + P GFAFIEF
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEF 53
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 31.9 bits (69), Expect = 0.26
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +1
Query: 97 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 243
M+S G VYVG + +E++ F G +N+V + + P GFAF+EF
Sbjct: 1 MASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEF 54
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 31.9 bits (69), Expect = 0.26
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNS---VWVALNPPGFAFIEFENLQRRKMRV 273
T VYV + KE LE+ F K+G + S + V GF F+ F N + + V
Sbjct: 213 TNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAV 269
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFE 246
G +YV L E + + L+++F+ YG + S V + GF F+ FE
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFE 365
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 31.5 bits (68), Expect = 0.34
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVW 204
+V+VGGL +K+ D+ F +YG+L W
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYGRLQVDW 118
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 31.5 bits (68), Expect = 0.34
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNS---VWVALNPPGFAFIEFENLQRRKMRV 273
T VYV + KE LE+ F K+G + S + V GF F+ F N + + V
Sbjct: 153 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAV 209
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFE 246
G +YV L E + + L+++F+ YG + S V + GF F+ FE
Sbjct: 256 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFE 305
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 31.5 bits (68), Expect = 0.34
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNS---VWVALNPPGFAFIEFENLQRRKMRV 273
T VYV + KE LE+ F K+G + S + V GF F+ F N + + V
Sbjct: 150 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAV 206
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFE 246
G +YV L E + + L+++F+ YG + S V + GF F+ FE
Sbjct: 253 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFE 302
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 31.5 bits (68), Expect = 0.34
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNS---VWVALNPPGFAFIEFENLQRRKMRV 273
T VYV + KE LE+ F K+G + S + V GF F+ F N + + V
Sbjct: 213 TNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAV 269
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFE 246
G +YV L E + + L+++F+ YG + S V + GF F+ FE
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFE 365
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 31.5 bits (68), Expect = 0.34
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQRRKMRVA 276
RVYV + + + DL+ F+ +G++ +A P GF ++EF NL + +A
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIA 266
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 31.5 bits (68), Expect = 0.34
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQRRKMRVA 276
RVYV + + + DL+ F+ +G++ +A P GF ++EF NL + +A
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIA 266
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 31.5 bits (68), Expect = 0.34
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQRRKMRVA 276
RVYV + + + DL+ F+ +G++ +A P GF ++EF NL + +A
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIA 266
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFEN 249
++VG + + L REF+ YGK+ + + A P G+AFIE+ +
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSD 153
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 30.7 bits (66), Expect = 0.59
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQR-RKMRVA 276
R+YV + +++DL F YG++ SV + N GF F+ ++++ K R A
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAA 109
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 30.7 bits (66), Expect = 0.59
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQR-RKMRVA 276
R+YV + +++DL F YG++ SV + N GF F+ ++++ K R A
Sbjct: 52 RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAA 109
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 30.3 bits (65), Expect = 0.78
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEF 243
R+++ L K++DL+ F KYG+++ V V ++ GFA +EF
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEF 327
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFEN 249
+V++GGL ED+++ F+ YGK+ + + GF F+ F++
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDS 184
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFEN 249
+V++GGL ED+++ F+ YGK+ + + GF F+ F++
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDS 184
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 243
G VYVG ++DL F + G +++V + + P GFAF+EF
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEF 52
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFE 246
++ L + E LE F+++ L + + N PG AF+EF+
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFD 176
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 126
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++
Sbjct: 77 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 126
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
R+YV G+ E ++ L F KYG + + L+ P GF F+ F++
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQRRKMRVA 276
V+VG L + + E L+ F K+G+++ V G+ F+ F N Q + +A
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIA 194
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFE 246
T VYVG + + DL F YG + V + +AF+ +E
Sbjct: 237 TSVYVGNISQQTTDADLRDLFSTYGDIAEVRI-FKTQRYAFVRYE 280
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQRRKMRV 273
V+VG + + ++ + F K G + S+ + + P G+ FIEF ++Q ++ +
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAI 76
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
++ + EG + E ++ F ++ L V N FAFIE+E+
Sbjct: 145 LFCSNIPEGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYES 188
>U40953-6|AAB52651.1| 809|Caenorhabditis elegans Hypothetical
protein F53B1.8 protein.
Length = 809
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 291 QYHSSRYTHLPPLQVLKFYESET 223
QYH+ + HLPP Q+LK ET
Sbjct: 306 QYHTD-FWHLPPEQILKVSSGET 327
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Frame = -1
Query: 248 FSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTR--------PPTYTRVPPEL 99
FS P +A+ + FS L+N+ + S+ +P++ PPT RVPP++
Sbjct: 2 FSRRTTPSPSITTASSSTFSISNLTNNNATSTSDLPASAISNIVPQIPPTPRRVPPKI 59
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +1
Query: 154 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFEN 249
EDLE F ++GK+N+ + + +AFIEF+N
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 291
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +1
Query: 154 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFEN 249
EDLE F ++GK+N+ + + +AFIEF+N
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 291
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +1
Query: 154 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFEN 249
EDLE F ++GK+N+ + + +AFIEF+N
Sbjct: 186 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDN 222
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +1
Query: 124 VGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
V L + + +++L F K G++ +++A + P GFAF+ FE+
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFES 226
>U88175-6|AAB42283.1| 234|Caenorhabditis elegans Hypothetical
protein F21F3.6 protein.
Length = 234
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 155 SFLIPSTRPPTYTRVPPEL 99
+F + TRPP YTR+P ++
Sbjct: 210 AFAVDFTRPPPYTRLPTDV 228
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQRRKMRV 273
+YVGG E + ++ L F +G + ++ + ++ GF F+EF+ + M +
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAI 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,355,791
Number of Sequences: 27780
Number of extensions: 150796
Number of successful extensions: 485
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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