Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00941
(488 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 57 6e-09
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 57 6e-09
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 56 1e-08
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 55 2e-08
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 43 1e-04
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 43 1e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 42 2e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 42 2e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 42 2e-04
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 41 4e-04
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 39 0.002
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 38 0.003
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 38 0.004
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 38 0.004
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 38 0.005
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 38 0.005
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 37 0.006
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 37 0.008
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 37 0.008
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 37 0.008
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 36 0.011
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 36 0.015
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 36 0.015
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 35 0.026
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 35 0.026
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 35 0.026
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.026
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 35 0.026
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 35 0.034
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 34 0.045
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 34 0.045
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 34 0.045
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 33 0.10
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 33 0.10
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 33 0.10
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 33 0.10
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 32 0.18
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 32 0.18
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 32 0.24
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 32 0.24
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 32 0.24
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 32 0.24
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 32 0.24
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 31 0.32
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 31 0.32
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 31 0.42
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 31 0.55
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 31 0.55
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 31 0.55
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 31 0.55
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 30 0.96
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 30 0.96
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 29 1.3
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 29 1.3
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 29 1.7
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 1.7
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 29 1.7
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 1.7
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 29 2.2
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 29 2.2
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 29 2.2
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 29 2.2
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 29 2.2
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 29 2.2
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 28 2.9
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 28 2.9
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 28 2.9
At1g05510.1 68414.m00563 expressed protein 28 2.9
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 28 3.9
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 28 3.9
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 28 3.9
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 28 3.9
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 3.9
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 28 3.9
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 28 3.9
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 28 3.9
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 27 5.1
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 27 5.1
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 27 5.1
At3g08670.1 68416.m01007 expressed protein 27 5.1
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 27 5.1
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 27 5.1
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 27 5.1
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 27 5.1
At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM dom... 27 6.8
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 27 6.8
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 27 6.8
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 27 6.8
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 27 6.8
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 27 6.8
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 27 6.8
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 27 9.0
At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) / ... 27 9.0
At2g47310.1 68415.m05906 flowering time control protein-related ... 27 9.0
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 27 9.0
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 27 9.0
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 57.2 bits (132), Expect = 6e-09
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDD 47
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 57.2 bits (132), Expect = 6e-09
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDD 47
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 56.0 bits (129), Expect = 1e-08
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFED 47
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 55.2 bits (127), Expect = 2e-08
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFED 47
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 97 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFEN 249
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFED 54
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 97 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFEN 249
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFED 54
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 41.9 bits (94), Expect = 2e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 151 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQ 255
KED++ E K+GKLN ++V N GF ++ FEN Q
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQ 522
Score = 35.9 bits (79), Expect = 0.015
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +1
Query: 100 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQ 255
S G R+YVG L + ++DL + F+ +G + V V + GF F++F L+
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLE 336
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +1
Query: 97 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSV--WVALNPPGFAFIEFEN 249
MSS +R VYVG L I++ ++E F KYG + + V PPG+AF+EF++
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDD 54
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +1
Query: 97 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSV--WVALNPPGFAFIEFEN 249
MSS +R VYVG L I++ ++E F KYG + + V PPG+AF+EF++
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDD 54
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +1
Query: 97 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSV--WVALNPPGFAFIEFEN 249
MSS +R VYVG L I++ ++E F KYG + + V PPG+AF+EF++
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDD 54
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 41.1 bits (92), Expect = 4e-04
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Frame = +1
Query: 97 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFEN 249
MSS R +YVG L I+K ++E F KYG + + + + PPG+AF+EFE+
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFED 54
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +1
Query: 100 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPGFAFIEF 243
S GG R++VGGL E + ++DL + F G +++V +V FA+I+F
Sbjct: 6 SGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDF 54
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1
Query: 106 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
G TR+YVG L + DLER F +YG++ V + + +AF+EF +
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSD 53
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFEN 249
T VYV L E +DL+ F +YGK+ S V + GF F+ FEN
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFEN 78
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 106 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEF 243
G TR+YVG L + DLER F +YG++ V + + +AF+EF
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEF 51
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEF 243
+R++VGGL + + LE FD+YGK+ + + P GF FI F
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEF 243
+R++VGGL + + LE FD+YGK+ + + P GF FI F
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 37.1 bits (82), Expect = 0.006
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
T ++VGGL + EDL++ F+++G++ SV + + G F++F N
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG-KGCGFVQFVN 348
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQ 255
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L+
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLK 124
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 36.7 bits (81), Expect = 0.008
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQ 255
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L+
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLK 123
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 36.7 bits (81), Expect = 0.008
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
T ++VGGL + EDL++ F ++G++ SV + + G F++F N
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG-KGCGFVQFVN 350
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 36.3 bits (80), Expect = 0.011
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFEN 249
+YVG L I++ ++E F KYG++ + + + PP + F+EFE+
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEH 54
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 35.9 bits (79), Expect = 0.015
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
V+VG ++ DLER FDKYG+++ V + G+AF+ FE+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM---KSGYAFVYFED 44
Score = 31.9 bits (69), Expect = 0.24
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 148 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFE 246
K+ D+E+ F+ YGK+ +V + N F+F++FE
Sbjct: 106 KEHDIEKHFEPYGKVTNVRIRRN---FSFVQFE 135
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 35.9 bits (79), Expect = 0.015
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +1
Query: 103 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQ 255
S + ++VGGL + +EDL + F +G++ SV + + G F++F N Q
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG-KGCGFVQFANRQ 373
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.1 bits (77), Expect = 0.026
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
+++VGGL I +E+ + FD++G + V V + P GF FI F++
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.1 bits (77), Expect = 0.026
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
+++VGGL I +E+ + FD++G + V V + P GF FI F++
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.1 bits (77), Expect = 0.026
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
+++VGGL I +E+ + FD++G + V V + P GF FI F++
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 160
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 35.1 bits (77), Expect = 0.026
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQRRKM 267
G+R++VGGL + DLER F ++G + + L GF FI F + RR M
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFAD--RRAM 61
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 35.1 bits (77), Expect = 0.026
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 103 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFEN 249
S G +Y+ L + + E L+ F +YG + S V LNP GF F+ + N
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSN 381
Score = 31.1 bits (67), Expect = 0.42
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFE 246
T VYV L + I +++L + F K+G ++S V + G F F+ FE
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFE 277
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 34.7 bits (76), Expect = 0.034
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQRRKMRV 273
++VG L +G +EDL++ F G++ V + NP G AF+ F +++ K V
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAV 272
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 34.3 bits (75), Expect = 0.045
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEF 243
++VGG+ + K+DLE EF K+GK+ + L AFI++
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIED-FRFLRERKTAFIDY 292
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQ 255
++VG L + DL F +YG ++ + V + GFAFI + +++
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVE 64
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 34.3 bits (75), Expect = 0.045
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENL 252
G +YV GL + + DLE F K GK+ V + L+P GF FI +++
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSV 96
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 34.3 bits (75), Expect = 0.045
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENL 252
G +YV GL + + DLE F K GK+ V + L+P GF FI +++
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSV 126
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 33.1 bits (72), Expect = 0.10
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 151 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQ 255
++D+ E KYG +N ++V N GF ++ F++++
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVE 492
Score = 30.3 bits (65), Expect = 0.73
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQRRK 264
++YVG L + + L + F+ +G + V + L+P GF FI+F L+ K
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSK 320
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 33.1 bits (72), Expect = 0.10
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Frame = +1
Query: 100 SSGGTR---VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
+ GG R ++VGGL I + + + FD++G + V V + P GF FI F++
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS 172
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 33.1 bits (72), Expect = 0.10
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFEN 249
T VYV L E ++L+ F +YG ++S V + G F F+ FEN
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFEN 274
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 33.1 bits (72), Expect = 0.10
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQ 255
T VYV LVE DL+R F ++G++ S V + G F F+ FE +
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAE 170
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 32.3 bits (70), Expect = 0.18
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFEN 249
+VYVG L + + KE LE F + GK+ S V+ P GF F+ F +
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSS 227
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 32.3 bits (70), Expect = 0.18
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
VYVG + DLER F K+G++ V + G+AF+ FE+
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVYFED 44
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 148 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEF 243
++ D+ER F+ YGK+ +V + N FAF++F
Sbjct: 108 RERDMERHFEPYGKVLNVRMRRN---FAFVQF 136
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 31.9 bits (69), Expect = 0.24
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 139 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFE 246
+ + DLER F+ YGK+ +V + N FAFI++E
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYE 138
Score = 30.7 bits (66), Expect = 0.55
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
V+ G ++ DLER F KYGK+ V + GFAF+ E+
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMED 44
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 31.9 bits (69), Expect = 0.24
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 139 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFE 246
+ + DLER F+ YGK+ +V + N FAFI++E
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYE 138
Score = 30.7 bits (66), Expect = 0.55
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
V+ G ++ DLER F KYGK+ V + GFAF+ E+
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMED 44
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 31.9 bits (69), Expect = 0.24
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = +1
Query: 100 SSGG-TRVYVGGLVEGIKKEDLEREFDKYGKL---NSVW--VALNPPGFAFIEFE 246
SSG T++YV GL ++ L F+++G L N V VA P GFAF+ +E
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYE 126
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFEN 249
+++VGG+ + +E L++ F +YG + VA P GF F+ F N
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAN 56
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 31.9 bits (69), Expect = 0.24
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKL 192
T+V+VGGL + E L R FD+YG +
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDI 50
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 31.5 bits (68), Expect = 0.32
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALN-PPGFAFIEFEN 249
+++VGGL + E+ + F+ YG + V + A N P GF F+ F++
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS 160
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +1
Query: 97 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
M S +++VGG+ ++ L F YG+++ V + P GF F+ F +
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSD 56
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.5 bits (68), Expect = 0.32
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQRRK 264
T VYV L+E + + L F +YG ++SV V + GF F+ F N + K
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAK 256
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 31.1 bits (67), Expect = 0.42
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEF 243
T VYV L + I ++L++ F KYG ++S V + G F F+ F
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNF 272
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 30.7 bits (66), Expect = 0.55
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 139 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFE 246
+ + DLE+ F+ YGK+ +V + N FAFI++E
Sbjct: 66 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYE 98
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 30.7 bits (66), Expect = 0.55
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 139 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFE 246
+ + DLE+ F+ YGK+ +V + N FAFI++E
Sbjct: 107 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYE 139
Score = 29.9 bits (64), Expect = 0.96
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFEN 249
V+ G ++ DLER F KYGK+ V + GFAF+ E+
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDM---KAGFAFVYMED 44
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 30.7 bits (66), Expect = 0.55
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 103 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEF 243
S ++VGG+ + EDL + F ++G++ SV + + G F++F
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG-KGCGFVQF 363
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 30.7 bits (66), Expect = 0.55
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
+++VGGL + ++ F+ YG ++ + ++ P GF F+ F++
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS 160
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 29.9 bits (64), Expect = 0.96
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +1
Query: 94 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFEN 249
TM G + VYVGGL I +E + R F YG + +V + ++ + F+ F N
Sbjct: 2 TMDDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSN 56
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 29.9 bits (64), Expect = 0.96
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFEN 249
T+V+VGGL + E L + F++YG+ L +V +A G+ F+ F +
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRD 74
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +1
Query: 145 IKKEDLEREFDKYGKLNSV 201
+K+ED+E F +YGK+NSV
Sbjct: 127 VKREDVESFFSQYGKVNSV 145
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +1
Query: 100 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQ 255
+ G RVYVG L G+ LE F + GK+ V + GF F+ +++ Q
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQ 256
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQ 255
T++YVGGL +KE L F ++G++ V V + G+ F+ F++ +
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAE 65
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 219
V+VG L +KK+ + +EF K+G++ SV + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEF 243
G +++VG L + +DL F ++G + ++ +P GF F+ F
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF 288
Score = 27.1 bits (57), Expect = 6.8
Identities = 7/32 (21%), Positives = 19/32 (59%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV 207
TR++V + + + D F++YG++ +++
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYM 122
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 148 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEF 243
++ D+ER F+ YGK+ +V + N FAF++F
Sbjct: 82 RERDMERHFEPYGKVLNVRMRRN---FAFVQF 110
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 100 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQRRKM 267
SS G ++V L I E+L F YG++ V ++ +IEF ++++ K+
Sbjct: 292 SSEGA-LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKV 346
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 97 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG 186
MS R +VGGL EDL+R F ++G
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFG 30
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 97 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG 186
MS R +VGGL EDL+R F ++G
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFG 30
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 97 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG 186
MS R +VGGL EDL+R F ++G
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFG 30
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 97 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG 186
MS R +VGGL EDL+R F ++G
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFG 30
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 181 YGKLNSVWVALNPPGFAFIEFENLQRRK 264
+G +N +W LNPPG A I EN+ K
Sbjct: 405 FGAMN-MWFLLNPPGKATIHVENVDEFK 431
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 100 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 192
S G R+YVG L G+ LE F++ GK+
Sbjct: 245 SGSGNRLYVGNLSWGVDDMALENLFNEQGKV 275
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 100 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKL 192
S G R+YVG L G+ LE F++ GK+
Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKV 283
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKL 192
T+V+VGGL +++ R FD++G++
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEI 43
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVW 204
G +++ G+ E I+++DLE+ YGK+ W
Sbjct: 121 GGFLFMPGVPEAIQRQDLEKVAKTYGKVYHFW 152
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 243
+++++GG+ + ++ L F KYG++ V L+ GF F+ F
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTF 88
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 225
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 123
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 225
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 59
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 225
GT++Y+ L G+ ED++ F + G+L V + G
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 125
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 207
+YVGGL I ++D+ F YG++ S+ V
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +1
Query: 148 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEF 243
+ E+L F+++G + V++ + P GFAF+EF
Sbjct: 59 RPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENL 252
+Y+ L E IKKE+L+R F ++G++ V VAL P G A++ F +
Sbjct: 12 IYIQNLNERIKKEELKRSLYCLFSQFGRILDV-VALKTPKLRGQAWVTFSEV 62
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQ 255
++++VGGL E L+ F +GK+ V L+ GF F+ +++++
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIE 88
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQRRKMRVA 276
R+YVG L + LER F ++GK+ V + GF F++ N + +A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKL 192
GT++Y+ L G+ ED++ F + G L
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDL 134
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 27.5 bits (58), Expect = 5.1
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFE 246
R ++GGL L F+KYG L V L+ GF FI F+
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFD 56
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 5.1
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 245 SNSM-KAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPP 105
S+SM KA+P S T S P LS S P++RP T TR P
Sbjct: 230 SSSMDKARPSLSSRPSTPTSRPQLSASSPNIIASRPNSRPSTPTRRSP 277
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 103 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG 225
S G+ +YV L E + + L F +G + S V +P G
Sbjct: 324 SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSG 364
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEF 243
+YVGGL I ++D+ +F +G++ S+ + L AF+ +
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRI-LADKACAFVTY 270
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 252 AEAEDACSAMNGTEMLGATLKVEISR 329
A A++A + MNG ++ G LKV++ R
Sbjct: 391 AAAQNAINTMNGCQLSGKKLKVQLKR 416
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 252 AEAEDACSAMNGTEMLGATLKVEISR 329
A A++A + MNG ++ G LKV++ R
Sbjct: 382 AAAQNAINTMNGCQLSGKKLKVQLKR 407
>At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM
domain-containing protein low similarity to SP|P40748
Synaptotagmin III (SytIII) {Rattus norvegicus}; contains
Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
Length = 1027
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 156 FLLDSLDETADVHASTTRTHGLVLFMKIQLKFIYVNKN 43
FL + DE AD+ + H K+QL+ NKN
Sbjct: 626 FLKHTADELADLSVALVGNHAQASQSKLQLRIFLENKN 663
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 27.1 bits (57), Expect = 6.8
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +1
Query: 112 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFEN 249
T+V+VGGL KE + F KYG L +V ++ G+ F+ F++
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKD 67
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFEN 249
VYVGG+ + + DL F +YG++ V + + GFAF+ +E+
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYED 86
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 180 IWKTKLSLGSTKSPRFRFHRI*ELAEAEDACSAMNGTEMLGATLKVEISR 329
+W+ + S S FR + +A+DA ++G + G+ + VE SR
Sbjct: 1 MWENTPCMWSLLSSHFRNQEFGDPRDADDARHYLDGRDFDGSRITVEFSR 50
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEF 243
+YVGGL + ++D+ +F +G++ S+ + L AF+ +
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRI-LAEKACAFVTY 270
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/50 (18%), Positives = 26/50 (52%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQRRKM 267
++V + ++ +L F++YG + +++ GF I + +++ +M
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARM 219
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 213 KSPRFRFHRI*ELAE---AEDACSAMNGTEMLGATLKVEISR 329
++P R H+ E + AE A A+N E+ G +KVE SR
Sbjct: 284 ETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSR 325
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/50 (18%), Positives = 26/50 (52%)
Frame = +1
Query: 118 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQRRKM 267
++V + ++ +L F++YG + +++ GF I + +++ +M
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARM 219
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 213 KSPRFRFHRI*ELAE---AEDACSAMNGTEMLGATLKVEISR 329
++P R H+ E + AE A A+N E+ G +KVE SR
Sbjct: 284 ETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSR 325
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 109 GTRVYVGGLVEGIKKEDLEREFDKYGKL 192
GTR++V L +G+ ED+ F + G++
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEV 119
>At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) /
caspase family protein contains similarity to
latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
contains Pfam profile PF00656: ICE-like protease
(caspase) p20 domain
Length = 418
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 188 FPYLSNSRSRSSFLIPSTRPPTYTRVP 108
FP+ ++S + S+F+ P P YT P
Sbjct: 49 FPFPNSSPAPSTFIYPPPTPSPYTHAP 75
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEF 243
++YV L + K ++ F +YG + +++AL+ G+AF++F
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQF 254
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +1
Query: 115 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQRRKMRVAR 279
R +VGGL ++ +ER F+++G++ + ++ GF F+ F++ + + R
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 145 IKKEDLEREFDKYGKLNSVWVALNPPG 225
I KE LE+ + K N VW+ NP G
Sbjct: 380 IPKEGLEKIWKTMLKFNFVWIEFNPYG 406
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,888,335
Number of Sequences: 28952
Number of extensions: 143748
Number of successful extensions: 536
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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