Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00940
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 31 0.17
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 28 1.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 1.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.6
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 3.6
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 4.7
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 25 8.2
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc... 25 8.2
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 31.1 bits (67), Expect = 0.17
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 266 LSPELRDQSTSPQTRHFGSSQ-PTNGAFRYLKHRSSFSSNPSLATKGSTSKLTLRHSPLS 442
+S E R+ P+ +G+S+ P + YL+ R S + SL+ STS+ T + LS
Sbjct: 255 VSGESRNLMVDPKVSPYGNSRTPLRDSSNYLRDRRSINRQSSLSIPKSTSETTRKTLALS 314
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 232 CLEDFMITEEMCSVNMFMDSTVSSGDGVESGPQGIGGAASAK-HVPSFFQSTMVNVTGSW 56
CL + ++ + + D+ VS G GP+GI A+S + + F S VN SW
Sbjct: 81 CLVEQSEDFDIAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESW 140
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 372 NDDRCLRYLKAPLVGWEDPK*RVWGDVD 289
N D LR +K L GW + VW D+D
Sbjct: 2735 NIDNKLRDIKVVLQGWRERLPNVWDDID 2762
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 2.7
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Frame = -2
Query: 343 STVSGLGGSEMTCLGRRRLIPKLGGKSDAVKQSSTSTCLEDFMITEEMCSVNMFMDSTV- 167
S+ S S T P S A+ SS+S + M S ++ S+V
Sbjct: 94 SSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSS--SSGMSSSSLSHSSSVP 151
Query: 166 SSGDGVESGPQGIGG-AASAKHVPSFFQ---STMVNVTGSWLSRRPSCMTTGRWSESSS 2
SS S G ++SA V S ++ S + V+ S++S + TT W+ SSS
Sbjct: 152 SSSSSYHSSSMTTSGLSSSASIVSSTYRDGPSIITLVSTSYVSEVVTPTTTNNWNSSSS 210
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 117 AAPPIPCGPDSTPSP 161
+APP+P GP S P P
Sbjct: 1719 SAPPMPAGPPSAPPP 1733
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +2
Query: 224 FQTSRCGGLLHRIRLSPELRDQSTSPQTRHFGSSQPTNGAFRYLKHRSSFSSNPSLATKG 403
FQT+ GL++ PE ++ S T+ +S T F S+ + SL+
Sbjct: 1534 FQTANLPGLINISAFLPEFTSEAVSDYTKECIASGFTMARFLPFSTSSTLADKDSLS--- 1590
Query: 404 STSKLTLRHSPLSFS 448
+ KL L H+ ++
Sbjct: 1591 AVKKLALDHAHCDYN 1605
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 303 KHVISDPPNPLTVLLGTSSTGH 368
+H++ +PP PLTVL GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -2
Query: 529 VANTDPSRAVFAESTTGSEKRPTEKIRRETQWAVSE 422
+A +PS+ A+ G E++PT+ + +W E
Sbjct: 27 LAAENPSKREVAQDVPGFERKPTKVRKPRVKWTEKE 62
>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 72 LTMVDWKKLGTCLADAAPPIPCGPDSTPSPEDTVESIN 185
LTM D + C D PPI D++ + VE+IN
Sbjct: 255 LTMTDSNQFHACCLDTFPPIFYLNDTSRAVIRVVENIN 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,375
Number of Sequences: 5004
Number of extensions: 58625
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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