Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00940
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0443 - 3399226-3399242,3399551-3399731,3399847-3399936,340... 30 1.6
02_05_0166 + 26412217-26413403,26413918-26414800 29 2.8
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461... 29 3.7
03_06_0766 - 36106116-36106230,36106598-36106716,36106880-361069... 29 4.9
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 29 4.9
01_03_0196 - 13696056-13697448,13697676-13697713 29 4.9
01_06_0475 + 29610268-29610711 28 6.5
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611... 28 6.5
12_01_0355 - 2704909-2705745 28 8.6
11_08_0011 + 27612206-27615110,27615211-27615538,27615989-276160... 28 8.6
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 28 8.6
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 28 8.6
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142... 28 8.6
>11_01_0443 -
3399226-3399242,3399551-3399731,3399847-3399936,
3400377-3400459,3400540-3400667,3400747-3401002,
3401094-3401199,3401300-3401366,3401467-3401580,
3401811-3401889,3402189-3402359,3403135-3403267,
3403874-3404033,3404119-3404261
Length = 575
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +2
Query: 251 LHRIRLSPELRDQSTSPQTRHFGSSQPTNGAFRYLKHRSSFSSNPSLATKGSTSKLTLRH 430
L +RL + S+S T+H SS+ T A KH S + P T TS+LT H
Sbjct: 509 LKSLRLYTD-ESNSSSEVTKH--SSEVTKHASEVTKHTSEVTKQPPELTSSHTSQLTPAH 565
>02_05_0166 + 26412217-26413403,26413918-26414800
Length = 689
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = -2
Query: 259 AVKQSSTSTCLEDFMITEEMCSVNMFMDSTVSS--GDGVESGPQGIGGAASAKHVPSFFQ 86
+++ STSTC + +E + +V +S S G+ +ES + A+ + V
Sbjct: 197 SIRGRSTSTCRSGVLTSESILTVEKTCESAKDSTRGNSMESTKTSMSRASDSSGVSD--D 254
Query: 85 STMVNVTGSWLSRRPSCMTTGRW 17
S N+TGS + +P RW
Sbjct: 255 SNWSNITGS--ANKPHKGNDPRW 275
>02_05_1224 +
35045268-35045270,35045735-35045863,35046037-35046180,
35046306-35046451,35046583-35046739,35046838-35046896,
35046978-35047137,35047716-35047865,35047969-35048105,
35048186-35048332,35048428-35048540,35048880-35048971,
35049637-35049738,35050108-35050145,35050255-35050381,
35050462-35050632,35050721-35050852,35050929-35051038,
35051118-35051178,35051386-35051427,35051756-35051933,
35052043-35052248,35052843-35052962,35053138-35053182,
35053310-35053408,35053846-35054058,35054254-35054393,
35054469-35054583,35054684-35054722,35054816-35054899,
35054969-35055139,35055891-35056100,35056193-35056378,
35056473-35056601,35056679-35056749,35056834-35056933,
35057016-35057072,35057778-35057834,35057940-35058020,
35058256-35058338,35058448-35058562
Length = 1572
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 185 HIYRAHLFRDHKVFQTSRCGGLLHRIRLS 271
+I + +F + V Q RCGG++ IR+S
Sbjct: 650 NILKPSIFENQNVLQQLRCGGVMEAIRIS 678
>03_06_0766 -
36106116-36106230,36106598-36106716,36106880-36106960,
36107062-36107118,36107350-36107373,36107810-36107909,
36107983-36108053,36108132-36108236,36108674-36108847,
36109406-36109555,36109701-36109871,36109968-36110024,
36110107-36110142,36110165-36110357,36110439-36110578,
36110960-36111166,36111442-36111498,36111711-36111809,
36112289-36112408,36112865-36113032,36113450-36113510,
36113611-36113720,36114132-36114263,36114344-36114511,
36115118-36115182,36115242-36115372,36115450-36115487,
36116272-36116373,36116480-36116537,36117479-36117580,
36117695-36117909,36118158-36118307,36118699-36118858,
36118984-36119042,36119287-36119443,36119536-36119681,
36121376-36121648,36122889-36122891
Length = 1457
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 185 HIYRAHLFRDHKVFQTSRCGGLLHRIRLS 271
++ + +F + V Q RCGG+L IR+S
Sbjct: 634 NVLKPAIFENSNVLQQLRCGGVLEAIRIS 662
>02_04_0157 +
20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 185 HIYRAHLFRDHKVFQTSRCGGLLHRIRLS 271
++ + +F + V Q RCGG+L IR+S
Sbjct: 647 NVLKPAIFENSNVLQQLRCGGVLEAIRIS 675
>01_03_0196 - 13696056-13697448,13697676-13697713
Length = 476
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 283 PKLGGKSDAVKQSSTSTCLEDFMITEEMCSVNM-FMDSTVSSGDGVES 143
PKL +SD S+TST L DF + + V + M ST+S G+E+
Sbjct: 50 PKLTKRSDKTAASTTSTGLADFSMLLFVTGVYIRMMHSTMSKFLGLET 97
>01_06_0475 + 29610268-29610711
Length = 147
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +2
Query: 338 GAFRYLKHRSSFSSNPSLATKG----STSKLTLRHSPLSFSPD 454
G R+++ SS+PS + S+++ TL HSP S SPD
Sbjct: 38 GCKRFIEQTVETSSSPSPMSSSPPSRSSTRATLTHSPSSASPD 80
>01_06_0210 -
27559090-27559239,27560445-27560567,27561069-27561128,
27562045-27562068,27562313-27562653,27562684-27563731
Length = 581
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 122 STNPLRPGFNSIPRGHSRIHKHIYRAHLFR 211
S L P F S+ R +SR H+ + HLFR
Sbjct: 97 SPGELEPPFLSLLRAYSRAHQPLAALHLFR 126
>12_01_0355 - 2704909-2705745
Length = 278
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -2
Query: 268 KSDAVKQSSTSTCLEDFMITEEMCSVNMFMDSTVSSGDGVESG 140
KS AVK+S+ S CL+ + +C+ + +STV + D V+ G
Sbjct: 102 KSSAVKRSA-SFCLKSSESSLLLCTEGLGTESTVDADDMVKDG 143
>11_08_0011 +
27612206-27615110,27615211-27615538,27615989-27616059,
27616962-27617118,27617676-27617709
Length = 1164
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 604 KLIALRGYISVALTVGELTGLKPDDVANTDPS 509
+L LR I++ + LTGL P+D+ N PS
Sbjct: 169 ELQGLRSLININIQTNYLTGLVPNDLFNHTPS 200
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 185 HIYRAHLFRDHKVFQTSRCGGLLHRIRLS 271
++ + +F + V Q RCGG+L IR+S
Sbjct: 1176 NVLKPAIFENVNVMQQLRCGGVLEAIRIS 1204
>03_05_0728 -
27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 185 HIYRAHLFRDHKVFQTSRCGGLLHRIRLS 271
++ + +F + V Q RCGG+L IR+S
Sbjct: 622 NLLKPAIFENTNVIQQLRCGGVLEAIRIS 650
>01_05_0309 - 20713774-20713818,20713838-20713915,20714044-20714222,
20714296-20714556,20715222-20715393,20715501-20715662,
20716435-20716863,20717729-20717785,20717872-20718842,
20719098-20719182,20719269-20719637,20719756-20720001,
20720090-20720362,20720663-20720827,20721328-20721556,
20721727-20722168,20723152-20724138,20724352-20724517,
20725070-20725728,20725820-20726186
Length = 2113
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 255 TASDFPPSLGISRRRPKHVISDPPNPLTVLLGT 353
T++ F PS+G+ RR+ H+ S P T+ LG+
Sbjct: 1711 TSTSFSPSVGLGRRKGSHLSSGGP---TISLGS 1740
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,166,079
Number of Sequences: 37544
Number of extensions: 446256
Number of successful extensions: 1584
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1584
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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