Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00940
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.94 
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_38364| Best HMM Match : zf-NPL4 (HMM E-Value=4.1)                   29   3.8  
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.6  

>SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1205

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
 Frame = -2

Query: 307 CLGRRRLIPKLGGKSDAVKQSSTSTCLEDFMITEEMCSVNMFMDSTVSSGDGVESGPQG- 131
           C G  R IP       AV Q   +  L+DFM + E           +  G    +G  G 
Sbjct: 112 CTGFTRPIPATPENDGAVPQKVVNATLQDFMYSNEALRAVALPLGALGGGSVALAGDGGL 171

Query: 130 ----IGGAAS-AKHVPSFFQSTMVNVTGS 59
               I GA +   HVP+ F +  V  T S
Sbjct: 172 RQWQISGAVNHTAHVPNSFFAIRVEQTNS 200


>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1634

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -2

Query: 235 TCLEDFMITEEMCSVNMFMDSTVSSGDGVESGPQGIGGAASAKHVPSFFQSTMVNVTG 62
           +C EDFM  E    V +  +++++ G G +S    +G  ++ K   S   + M+ ++G
Sbjct: 81  SCQEDFMEIEFRAKVYLDSNASINKGKGPKSVGVEVGSISTEKPDQSKSMNGMIGISG 138


>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 295  RRLIPKLGGKSDAVKQSSTSTCLEDFMI 212
            RR+I + GG +DA + +    CL DF +
Sbjct: 1034 RRIIQETGGNADAAEDAVIEVCLADFCV 1061


>SB_38364| Best HMM Match : zf-NPL4 (HMM E-Value=4.1)
          Length = 145

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 98  QLLPIHHGQRDWVMVEQATELHDDRSVV*VE 6
           ++ P  HG  D V  +Q TE+H D  VV ++
Sbjct: 96  KVTPCAHGHHDIVQAQQPTEIHFDDGVVIIQ 126


>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 299 PQTRHFGSSQPTNGAFRYLKHRSSFSSNPSLATKGSTSKLTLR-HSPLSFS 448
           P T    +  P++    ++   SS SS  S  TKG +S+L  R HSP S S
Sbjct: 635 PDTPMLPALSPSSSIATFMIGSSSNSSGISTPTKGFSSRLKGRSHSPRSIS 685


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,443,390
Number of Sequences: 59808
Number of extensions: 470654
Number of successful extensions: 1508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)