Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00940
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical pr... 29 2.5
U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81041-11|CAJ90515.1| 713|Caenorhabditis elegans Hypothetical p... 29 3.3
Z81041-10|CAB02785.3| 743|Caenorhabditis elegans Hypothetical p... 29 3.3
U42835-1|AAA83585.1| 87|Caenorhabditis elegans Hypothetical pr... 29 4.4
U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical pr... 29 4.4
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr... 29 4.4
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 28 7.7
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 28 7.7
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 28 7.7
L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily as... 28 7.7
L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily ass... 28 7.7
>U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical
protein C01F4.2b protein.
Length = 622
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 290 STSPQTRHFGSSQPTNGAFRYLKHRSSFSSNPSLATKGSTS--KLTLRHSPLSFS 448
STS + F S +R KHR+ F S S K +LTLRH + S
Sbjct: 112 STSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166
>U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical
protein C01F4.2a protein.
Length = 986
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +2
Query: 290 STSPQTRHFGSSQPTNGAFRYLKHRSSFSSNPSLATKGSTS--KLTLRHSPLSFS 448
STS + F S +R KHR+ F S S K +LTLRH + S
Sbjct: 112 STSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166
>Z81041-11|CAJ90515.1| 713|Caenorhabditis elegans Hypothetical
protein C27A7.3b protein.
Length = 713
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 169 VSSGDGVESGPQGIGGAASAKHVPSFFQSTMVNVTGSWLSRRP 41
V SG V+ GI +K P+ F ++ TG+WLS P
Sbjct: 598 VLSGLAVDRNLDGIADDEESKE-PTHFYRILITCTGNWLSTNP 639
>Z81041-10|CAB02785.3| 743|Caenorhabditis elegans Hypothetical
protein C27A7.3a protein.
Length = 743
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 169 VSSGDGVESGPQGIGGAASAKHVPSFFQSTMVNVTGSWLSRRP 41
V SG V+ GI +K P+ F ++ TG+WLS P
Sbjct: 628 VLSGLAVDRNLDGIADDEESKE-PTHFYRILITCTGNWLSTNP 669
>U42835-1|AAA83585.1| 87|Caenorhabditis elegans Hypothetical
protein C04F6.2 protein.
Length = 87
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 272 PELRDQSTSPQTRHFGSSQPTNGAFRYLKHRSS 370
PE ++ RHF P F YLKH++S
Sbjct: 14 PETAGKTPQEINRHFSPEFPGTNVFLYLKHKAS 46
>U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical
protein F32A5.2b protein.
Length = 859
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 15 DHRPVVMQLGRLLNHDPVTLTMVDWKKLGTC 107
D+ ++MQ G+ ++HD T+V K C
Sbjct: 391 DYNALIMQFGQFISHDMAKTTLVPSSKCNVC 421
>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
protein F32A5.2a protein.
Length = 1000
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 15 DHRPVVMQLGRLLNHDPVTLTMVDWKKLGTC 107
D+ ++MQ G+ ++HD T+V K C
Sbjct: 532 DYNALIMQFGQFISHDMAKTTLVPSSKCNVC 562
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Frame = -2
Query: 268 KSDAVKQSSTSTCLEDFM-----ITEEMCSVNMFMDSTVSSGDGVESGPQGIGGAASAKH 104
+ D +K S L D + + + + F+D DGV G IGG SA+
Sbjct: 1513 QQDYIKADSERDILSDALRRFQSSANRVINFHTFVDGGAGYVDGVPGGTSVIGGGPSAQR 1572
Query: 103 VPSFFQSTMVNVTGSWLSRRPSCMTTGR 20
++ S+ V GS +S P GR
Sbjct: 1573 SGAYDPSS-GGVIGSGISGGPGGSDFGR 1599
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Frame = -2
Query: 268 KSDAVKQSSTSTCLEDFM-----ITEEMCSVNMFMDSTVSSGDGVESGPQGIGGAASAKH 104
+ D +K S L D + + + + F+D DGV G IGG SA+
Sbjct: 1586 QQDYIKADSERDILSDALRRFQSSANRVINFHTFVDGGAGYVDGVPGGTSVIGGGPSAQR 1645
Query: 103 VPSFFQSTMVNVTGSWLSRRPSCMTTGR 20
++ S+ V GS +S P GR
Sbjct: 1646 SGAYDPSS-GGVIGSGISGGPGGSDFGR 1672
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.9 bits (59), Expect = 7.7
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Frame = -2
Query: 268 KSDAVKQSSTSTCLEDFM-----ITEEMCSVNMFMDSTVSSGDGVESGPQGIGGAASAKH 104
+ D +K S L D + + + + F+D DGV G IGG SA+
Sbjct: 1586 QQDYIKADSERDILSDALRRFQSSANRVINFHTFVDGGAGYVDGVPGGTSVIGGGPSAQR 1645
Query: 103 VPSFFQSTMVNVTGSWLSRRPSCMTTGR 20
++ S+ V GS +S P GR
Sbjct: 1646 SGAYDPSS-GGVIGSGISGGPGGSDFGR 1672
>L16621-10|AAA28227.1| 507|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform a protein.
Length = 507
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 266 LSPELRDQSTSPQTRHFGSSQP-TNGAFRYLKHRSSFSSNPSLA 394
L+PEL+ + R +G SQP N ++ ++H SS +LA
Sbjct: 101 LAPELKAAVVFVEHRFYGKSQPFKNESYTDIRHLGYLSSQQALA 144
>L16621-9|AAL11487.1| 568|Caenorhabditis elegans Temporarily
assigned gene nameprotein 282, isoform b protein.
Length = 568
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 266 LSPELRDQSTSPQTRHFGSSQP-TNGAFRYLKHRSSFSSNPSLA 394
L+PEL+ + R +G SQP N ++ ++H SS +LA
Sbjct: 162 LAPELKAAVVFVEHRFYGKSQPFKNESYTDIRHLGYLSSQQALA 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,289,013
Number of Sequences: 27780
Number of extensions: 339624
Number of successful extensions: 1210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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