Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00940
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g22830.1 68417.m03296 expressed protein 30 1.8
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi... 29 3.1
At5g06970.1 68418.m00789 expressed protein 29 4.1
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 29 4.1
At4g02290.1 68417.m00310 glycosyl hydrolase family 9 protein sim... 28 5.4
At1g61080.1 68414.m06877 proline-rich family protein 28 5.4
At5g41450.1 68418.m05034 zinc finger (C3HC4-type RING finger) fa... 28 7.2
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:... 28 7.2
At3g15780.1 68416.m01998 expressed protein 28 7.2
At1g04160.1 68414.m00406 myosin family protein contains Pfam pro... 28 7.2
At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identi... 27 9.5
At5g42280.1 68418.m05146 DC1 domain-containing protein contains ... 27 9.5
At4g28710.1 68417.m04106 myosin heavy chain, putative similar to... 27 9.5
At3g52890.2 68416.m05829 protein kinase (KIPK) identical to prot... 27 9.5
At3g52890.1 68416.m05828 protein kinase (KIPK) identical to prot... 27 9.5
At2g40316.1 68415.m04968 expressed protein 27 9.5
At2g37390.1 68415.m04585 heavy-metal-associated domain-containin... 27 9.5
>At4g22830.1 68417.m03296 expressed protein
Length = 193
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +3
Query: 6 LDSDHRPVVMQLGRLLNHDPVTLTMVDWKKLGTCLADAAPPIPCGPDST 152
L + + PV+ R L HDPV L+ + +GT L AA I GPD+T
Sbjct: 31 LTTSNEPVIRIRSRSLIHDPVALSGL----IGTSLV-AAAFITAGPDAT 74
>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 500
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 462 LRRSGEKLNGLCLRVNLLVEPFVAS 388
L SG++++G CLR NL+ + +VA+
Sbjct: 143 LLHSGKEVHGFCLRKNLICDAYVAT 167
>At5g06970.1 68418.m00789 expressed protein
Length = 1101
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = -2
Query: 298 RRRLIPKLGGKSDAVKQSSTSTCL 227
R RLI KLG KS++V QS +S+ L
Sbjct: 231 RSRLIKKLGRKSESVSQSQSSSGL 254
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -2
Query: 328 LGGSEM-TCLGRRRLIPKLGGKSDAVKQSSTSTCLEDFMITEEMCSVNMFMDSTVSSGDG 152
LGG+E T ++++ +G + D K + ++D +TE + + M + S G
Sbjct: 12 LGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGREKMSALSSGGPA 71
Query: 151 VESGPQGIGGAASAKHVP 98
V G GG A++ P
Sbjct: 72 VAMVAGGGGGGAASAAEP 89
>At4g02290.1 68417.m00310 glycosyl hydrolase family 9 protein
similar to endo-1,4-beta glucanase; ATCEL2 GI:3132891
from [Arabidopsis thaliana]
Length = 516
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 245 LHIDLFGRLYDHGRDVLGKYVYGFDCVLGGWS*IRAAG 132
LH+DL G YD G ++ + F + WS I G
Sbjct: 92 LHVDLVGGYYDAGDNIKFGFPMAFTTTMLSWSVIEFGG 129
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 275 ELRDQSTSPQTRHFGSSQPTNGAFRYLKHRSSFSSNPSLATKGSTSKLTLRHS 433
E + +STSPQT SS+ + + + +SSF S S +T + L S
Sbjct: 234 EEKKESTSPQTGKTSSSRVLSPSESFSDSKSSFGSRNSFCGSPTTPRSVLPES 286
>At5g41450.1 68418.m05034 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 164
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +2
Query: 146 FNSIPRGHSRIHKHIYRAHLFRDHKVFQTSRCGGLLHRIRLSPELRDQSTSPQTR 310
F I G ++I I H++ + + C + HR + P L T P R
Sbjct: 98 FKDIKEGSNKIFCPICLEEFEDGHEIIRINMCRHVFHRFCIDPWLNQNLTCPNCR 152
>At5g20490.1 68418.m02435 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin-like protein
my5, common sunflower, PIR:T14279
Length = 1545
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 185 HIYRAHLFRDHKVFQTSRCGGLLHRIRLS 271
++ + +F + V Q RCGG+L IR+S
Sbjct: 649 NVLKPAIFENVNVIQQLRCGGVLEAIRIS 677
>At3g15780.1 68416.m01998 expressed protein
Length = 117
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 57 HDPVTLTMVDWKKLGTCLADAAPPIPCGPDSTPSPEDTVE 176
H T+ + ++L PP P GPD P PEDT +
Sbjct: 30 HRRNTVLLASPRRLRRLAVAGGPPSPPGPD-PPPPEDTTQ 68
>At1g04160.1 68414.m00406 myosin family protein contains Pfam
profiles: PF02736 myosin N-terminal SH3-like domain,
PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif, PF01843: DIL domain
Length = 1500
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 185 HIYRAHLFRDHKVFQTSRCGGLLHRIRLS 271
++ + +F + V Q RCGG++ IR+S
Sbjct: 635 NLLKPGIFENQNVLQQLRCGGVMEAIRIS 663
>At5g43900.1 68418.m05368 myosin heavy chain (MYA2) nearly identical
to PIR|S51824 myosin heavy chain MYA2 [Arabidopsis
thaliana]
Length = 1505
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 185 HIYRAHLFRDHKVFQTSRCGGLLHRIRLS 271
++ + +F + + Q RCGG++ IR+S
Sbjct: 634 NLLKPGIFENENILQQLRCGGVMEAIRIS 662
>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 694
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 273 PSLGISRRRPKHVISDPPNPLTVL-LGTSST 362
PS SR +PK +SDP PL + LG SS+
Sbjct: 4 PSPFFSRSKPKCRLSDPAQPLNLFRLGCSSS 34
>At4g28710.1 68417.m04106 myosin heavy chain, putative similar to
myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066.
Length = 899
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 203 LFRDHKVFQTSRCGGLLHRIRLS 271
+F + V Q RCGG++ IR+S
Sbjct: 640 IFENQNVLQQLRCGGVMEAIRIS 662
>At3g52890.2 68416.m05829 protein kinase (KIPK) identical to protein
kinase KIPK (KCBP-interacting protein kinase)
[Arabidopsis thaliana] gi|7716430|gb|AAF68383
Length = 934
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 244 STSTCLEDFMITEEMCSVNMF 182
+TS C++ F ITE C V+ F
Sbjct: 713 NTSNCIQPFCITEPSCQVSCF 733
>At3g52890.1 68416.m05828 protein kinase (KIPK) identical to protein
kinase KIPK (KCBP-interacting protein kinase)
[Arabidopsis thaliana] gi|7716430|gb|AAF68383
Length = 934
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 244 STSTCLEDFMITEEMCSVNMF 182
+TS C++ F ITE C V+ F
Sbjct: 713 NTSNCIQPFCITEPSCQVSCF 733
>At2g40316.1 68415.m04968 expressed protein
Length = 214
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -2
Query: 592 LRGYISVALTVGELTGLKPDDVANTDPSRAVFAESTTGSEKR 467
+RGY V ++G + K D + DP + V + +TG+ +
Sbjct: 47 VRGY-DVCTSLGHASSTKVDIIDKEDPGKGVIVQMSTGNRNQ 87
>At2g37390.1 68415.m04585 heavy-metal-associated domain-containing
protein contains Pfam PF00403: Heavy-metal-associated
domain; similar to copper homeostasis factor (CCH)
(ATX1) (GB:U88711) (TIGR_Ath1:At3g56240) [Arabidopsis
thaliana]
Length = 259
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -2
Query: 553 LTGLKPDDVANT---DPSRAVFAESTTGSEKRPTEK 455
L G PD + + DP++ V AE+ G +K TEK
Sbjct: 136 LLGSDPDSITGSVDQDPAKTVEAEAPAGEDKTLTEK 171
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,365
Number of Sequences: 28952
Number of extensions: 335502
Number of successful extensions: 1089
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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