Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00939
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 66 2e-11
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 62 6e-10
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 60 2e-09
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 56 3e-08
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 56 3e-08
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 54 9e-08
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 53 3e-07
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 39 0.005
SB_21512| Best HMM Match : HRDC (HMM E-Value=3.5) 34 0.13
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 33 0.30
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 30 2.1
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 29 4.9
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/69 (43%), Positives = 47/69 (68%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
LDV+++ PEEIS+K G + ++GKH+ + EHGY + +F R Y LP+ + TV SR++
Sbjct: 45 LDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRIT 103
Query: 441 SDGVLTVIA 467
DG+L + A
Sbjct: 104 GDGLLHIEA 112
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 384 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPSLKPA 524
R + LP++ + D++ SRL DG L + A R T +ER V L+ A
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPHERQVNILRDA 207
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 61.7 bits (143), Expect = 6e-10
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
LDV+ F PEEI+ K +G + V G + + E G+ S++F R Y LPE + ++ +R++
Sbjct: 11 LDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDESSISTRIA 69
Query: 441 SDGVLTVIA-PRTPAATKNERAVPSLK 518
DG+L V A ++P AT +A P+ K
Sbjct: 70 EDGMLHVEALKKSPPATTENKA-PATK 95
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYIS-RQFTRRYALPENCNPDTVESRL 437
LDV F PEE+ VK + V + E +EHG+ + RQF R + LP + DT+ RL
Sbjct: 104 LDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVDMDTLVPRL 161
Query: 438 SSDGVLTVIAPRTP 479
DGVL + A + P
Sbjct: 162 GKDGVLYIEADKRP 175
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
LDV+ + PEEIS K +G V V+G+H + E G+ ++F R + LPE +P+ V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 441 SDGVLTVIA 467
+ G L + A
Sbjct: 71 NHGHLHIEA 79
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
+DV F PE I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 102 IDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLD 160
Query: 441 SDGVLTVIAPRTPA 482
+G L A ++ A
Sbjct: 161 KEGKLHFEAKKSVA 174
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/69 (39%), Positives = 43/69 (62%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 441 SDGVLTVIA 467
+ G L + A
Sbjct: 71 NHGQLHIEA 79
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/95 (28%), Positives = 45/95 (47%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
+DV F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 103 MDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLD 161
Query: 441 SDGVLTVIAPRTPAATKNERAVPSLKPARSGRRLR 545
+G L A +R P+L P R + L+
Sbjct: 162 KEGKLHFEA--------KKRNAPALPPVRELKVLK 188
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/69 (39%), Positives = 43/69 (62%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 441 SDGVLTVIA 467
+ G L + A
Sbjct: 71 NHGQLHIEA 79
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/95 (28%), Positives = 45/95 (47%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
+DV F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 103 MDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLD 161
Query: 441 SDGVLTVIAPRTPAATKNERAVPSLKPARSGRRLR 545
+G L A +R P+L P R + L+
Sbjct: 162 KEGKLHFEA--------KKRNAPALPPVRELKVLK 188
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 441 SDGVLTVIA 467
+ G L + A
Sbjct: 71 NHGQLHIEA 79
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S
Sbjct: 246 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 304
Query: 441 SDGVLTVIA 467
+ G L + A
Sbjct: 305 NHGQLHIEA 313
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/95 (28%), Positives = 45/95 (47%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
+DV F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 337 MDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLD 395
Query: 441 SDGVLTVIAPRTPAATKNERAVPSLKPARSGRRLR 545
+G L A +R P+L P R + L+
Sbjct: 396 KEGKLHFEA--------KKRNAPALPPVRELKVLK 422
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
+DV F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 103 MDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLD 161
Query: 441 SDGVL 455
+G L
Sbjct: 162 KEGKL 166
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 54.4 bits (125), Expect = 9e-08
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 441 SDGVLTVIA 467
+ G L + A
Sbjct: 71 NHGQLHIEA 79
Score = 44.4 bits (100), Expect = 9e-05
Identities = 27/100 (27%), Positives = 47/100 (47%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
+DV F P+ I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 103 MDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSLTTRLD 161
Query: 441 SDGVLTVIAPRTPAATKNERAVPSLKPARSGRRLRSPLRK 560
+G L A +R P+L P R + L+ + +
Sbjct: 162 KEGKLHFEA--------KKRNAPALPPVRELKVLKDNISR 193
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
LDV+ + PEEIS K +G V V+G+H + G+ ++F R + LPE V++R+S
Sbjct: 13 LDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 71
Query: 441 SDGVLTVIA 467
+ G L + A
Sbjct: 72 NHGQLHIEA 80
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/95 (30%), Positives = 46/95 (48%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 440
+DV+ F PE I V+ ++V HE + H Y + F R++ LP + D++ +RL
Sbjct: 103 MDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPREVDMDSLTTRLD 161
Query: 441 SDGVLTVIAPRTPAATKNERAVPSLKPARSGRRLR 545
+G L A +R P+L P R + LR
Sbjct: 162 KEGKLHFEA--------KKRNAPALPPVRELKVLR 188
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 261 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI-SRQFTRRYALPE 404
LDV F PEE+ VK + V + E +EHG+ +RQF R + LP+
Sbjct: 32 LDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPQ 78
>SB_21512| Best HMM Match : HRDC (HMM E-Value=3.5)
Length = 191
Score = 33.9 bits (74), Expect = 0.13
Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 677 IKRSVSQARTRNANKINTRYNTF-LIHSVPRVIVL-FRCSQLPQWAP*SPSGP 525
IKRS T N N NTR + L H V R ++L FR LP WA P P
Sbjct: 133 IKRSSQFNSTGNINYTNTRMKCYALRHCVNRAVLLKFRALSLPTWAYSIPYQP 185
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 333 KHEERQDEHGYISRQFTRRYAL 398
KHEER+D HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 861
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 680 TIKRSVSQARTRNANKI--NTRYNTFLIHSVPRVIVLFRCSQLPQW 549
TIK++V RN+N++ + R+ TFL+ PR+ R QW
Sbjct: 425 TIKQTVQGFVMRNSNQMKKDVRFQTFLVICSPRLAEAMRGLDFEQW 470
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 327 EGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLT 458
E K+EE DEHG I R+ T+ TV ++ DGV T
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTT 1230
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 297 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 404
+++A GYV+ G H + + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 28.7 bits (61), Expect = 4.9
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Frame = +3
Query: 267 VQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSD 446
+ H+ + T + G+ E + Y+SR TR+ A P + PD S + +
Sbjct: 1565 MSHYQASTVLKNTGTSVELALGRSREAAE---YLSR--TRQQASPHSTEPDIKPSNIQTT 1619
Query: 447 GVLTVIAPRTPAATKNERAVP---SLKPARSGRRLRSP 551
I+PR R P + KP+ + SP
Sbjct: 1620 ESTPSISPRGVEVAAGPRRTPPPVAPKPSTDSLKRSSP 1657
>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -3
Query: 234 GDGGTDVSIGDRHLLPRTVVISGHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEWQQR 55
G G + S G++ + V +WR +G + RS + EV K V + +W+QR
Sbjct: 132 GSGDRERSGGEKEVETEKEVEGSRKWRREGSGDRERSGGEKEVETEKEVE--ERRKWRQR 189
>SB_32489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1240
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 157 PTMSRDYYRPWKQMAIANRDVGSTITSNKDKFQST*TFNTFRPKKSQ*RQPTATSSS 327
P+ + + Y P Q AN T +N Q+T ++NT + Q T+T SS
Sbjct: 805 PSQTTEAYTPPAQTTEANTPPAQTTEANTPPVQTTESYNTPTETTALPYQETSTESS 861
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 75 GIPTEPPSRSGLRTGAYSGRS-PDGRH 152
G P+ PPSRS RT SG S D RH
Sbjct: 853 GKPSTPPSRSKKRTRGISGDSVSDNRH 879
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,692,996
Number of Sequences: 59808
Number of extensions: 419336
Number of successful extensions: 1388
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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