Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00938
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0738 + 22669557-22669756,22669868-22669916,22670620-226706...    29   2.7  
03_05_0092 - 20714102-20717902                                         29   4.8  
07_03_0976 + 23061633-23061686,23062783-23063564,23065468-230657...    28   8.4  

>12_02_0738 +
           22669557-22669756,22669868-22669916,22670620-22670657,
           22670977-22671058,22671146-22671195,22671381-22671847,
           22671992-22672155,22672242-22672448,22672554-22672710,
           22672858-22672965,22673161-22673234,22673364-22673521,
           22673728-22673788,22673858-22673965
          Length = 640

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 481 PPDG*WLPSPWTLAMPGAEPSRGLPRFPVIVYCVSKT 591
           P    W+ +P + A  G EPSR L  + V V C  K+
Sbjct: 564 PATSPWVAAPQSRAQHGEEPSRSLVIYGVFVMCNCKS 600


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 531 GRAKSRPTAFPCYCLLRFKN 590
           G +KSR T FPC C ++ +N
Sbjct: 921 GSSKSRNTVFPCLCEIQIRN 940


>07_03_0976 +
           23061633-23061686,23062783-23063564,23065468-23065717,
           23065808-23065984
          Length = 420

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
 Frame = -3

Query: 562 GNAV--GRDLALPL------ALLKSMATVTTNHQVGRML--VCLEGQ*KNHIICL 428
           GNA   G DL LP        L  +  T+  N +  R L  +C+ GQ  NH+ICL
Sbjct: 37  GNATEDGLDLDLPADGCRRRELPSNRRTIEWNPKKDRFLFAICVSGQMSNHLICL 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,092,869
Number of Sequences: 37544
Number of extensions: 304870
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)