Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00937
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    29   0.74 
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    28   1.7  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    28   1.7  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   5.2  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    26   6.9  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   9.1  

>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
 Frame = -3

Query: 628 VNIHSTVKCNSNHLRYLIWFNSTWDTCTVSRTETVR*DALLGSQSGA--LFGSSSTVQAF 455
           +N        ++H+R L W ++T     +S++++   D        A  +FG + +V   
Sbjct: 349 INTMQGALVGTSHIR-LAWGHNTLPVSALSQSQSQVSDEGFDRTLSANQIFGMNQSVIGA 407

Query: 454 SSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGS 350
           +S SS  SG  L++   S ++   Q+ LP+  + S
Sbjct: 408 NSGSSNSSGSSLKSAPVSPRTAAAQSLLPNSVVSS 442


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 128  YRRTTDQRSAHLQLRRHL--VASHEKYCIPANQ 36
            + RTT    AHLQ  R+L  +A  E+  IP NQ
Sbjct: 1226 FPRTTQDNRAHLQAARNLWALAVEERCIIPRNQ 1258


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 391 PLPQANLPSGQIGSSVFKIG 332
           P+P+A LPS  IG  VF IG
Sbjct: 380 PVPEARLPSMMIGCIVFPIG 399


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -3

Query: 454 SSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIGKTFRGF 314
           +S   LQ   P+Q+++F+  +P P   +P   I ++   +G ++  F
Sbjct: 271 ASADRLQKNHPVQSSNFNPYTPAPSITVPPNYIPNTAM-MGPSYSSF 316


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 421 LQNNSFSMQSPLPQANLPS-GQIGSSVFK 338
           L+ NSF +  P+P  ++PS   I S VFK
Sbjct: 305 LKKNSFCLYLPIPLTSIPSTPSIRSHVFK 333


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1026

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 524  QVGRTVRITVRRSIWVQFDSASIFIGFIFAV 432
            Q  +T  + +   +W+   SA + IG  FA+
Sbjct: 993  QTNKTNEVEIPEVLWISQSSAEVHIGSTFAI 1023


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,285
Number of Sequences: 5004
Number of extensions: 62768
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)