Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00937
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 30 1.8
03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487... 30 2.3
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727... 30 2.3
12_01_0774 + 7063465-7064011,7065183-7065791,7067905-7068464,706... 29 3.1
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 29 3.1
01_01_0109 + 795842-796065,796086-796302,796480-796533 29 4.1
06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554 29 5.4
03_06_0586 + 34917836-34918038,34918155-34918488,34918560-349187... 29 5.4
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 28 7.2
11_04_0208 - 14871412-14872198,14872932-14873206,14873819-14873851 28 9.5
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 402 EKELFCNGKPDCKDESDENACTVELDPNRAP 494
+++L C+G D KD S+ AC +D N P
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTVP 1032
>03_06_0621 -
35147070-35148359,35148499-35148579,35148665-35148741,
35148792-35149298,35149405-35150278
Length = 942
Score = 29.9 bits (64), Expect = 2.3
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Frame = +3
Query: 276 DWKTNVKNCDQIEKPRKVLPILKTDEPICPEGKL------ACGSGDCIE-----KELFCN 422
D +N N I L + DEP CP +L ACGS +CI+ C
Sbjct: 216 DLLSNKINASTIGASMAYLSTVIADEPNCPTARLDNKTQFACGSNNCIDVANGGYSCACP 275
Query: 423 GKPDCKDESDENACTVELDPNRAPDC 500
G D + + C E +P +C
Sbjct: 276 GNSDDGNPYLLDDCKQEFNPTPKKNC 301
>01_07_0083 +
40970890-40971015,40971886-40971994,40972679-40972790,
40972944-40973100,40973609-40973761,40974143-40974292,
40974803-40974999,40975446-40975473
Length = 343
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -3
Query: 637 IDVVNIHS-TVKCNSNHLRYLIWF--NSTWDTCTVSRTETVR*DALLGSQSGALFGSSST 467
I+V I+S T+ C++ WF NS + C + + + L SGA+ G ++T
Sbjct: 89 INVYAIYSYTIHCSTQAENICFWFIQNSPYLICVICPEDHLHLSPYLSYVSGAIAGCAAT 148
Query: 466 VQAFSSD 446
V ++ D
Sbjct: 149 VGSYPFD 155
>12_01_0774 +
7063465-7064011,7065183-7065791,7067905-7068464,
7069411-7069530
Length = 611
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 56 TSRVKRQDDDG-AGDEPNADQLCDGRPADEYFRLTTEGPAAMS 181
T+ +RQ ++G A D P AD G A+ Y R + PAA +
Sbjct: 26 TAVAERQPEEGPAADSPVADAATGGAAAEPYARHDVDPPAAFA 68
>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 493 GALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIG 332
G + ST SS S +S L + +S + LP+ +LP G + S V IG
Sbjct: 1052 GEMHQEPSTCPQCSSGSLRKSLLSREGHSMDTEIILPEIDLPVGMVDSFVHDIG 1105
>01_01_0109 + 795842-796065,796086-796302,796480-796533
Length = 164
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +2
Query: 59 SRVKRQDDDGAGDEPNADQLCDGRPADEYFRLTTEGPAAMSSGATRA*RTASPGS 223
S +R D+ GAGDEP+ D RP + L G A SS A A +SP +
Sbjct: 21 SLTRRNDEPGAGDEPHVD-----RPHADALHL---GAGAASSVAATADSESSPAA 67
>06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554
Length = 449
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 155 TTEGPAAMSSGATRA*RTASPGSPQCAAPAVS 250
+T PAA S+ A A TA+P + AAPA +
Sbjct: 362 STAAPAAASTAAPAAASTAAPAAASTAAPAAA 393
>03_06_0586 +
34917836-34918038,34918155-34918488,34918560-34918712,
34918808-34919107,34919498-34919576,34919687-34919793,
34919861-34919979,34920532-34920850
Length = 537
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 74 QDDDGAGDEPNADQLCDGRPADEYFRLTTEGPAAMSSGAT 193
+DD G G + +AD+L D + D L G ++G T
Sbjct: 274 EDDGGGGGDRDADKLTDAQLKDNILTLLVAGHDTTTAGLT 313
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/54 (22%), Positives = 30/54 (55%)
Frame = -3
Query: 709 DEKRSFNLTTVRIMTITVEYLFI*IDVVNIHSTVKCNSNHLRYLIWFNSTWDTC 548
+E +S + + V+Y+ I +++V+ T KC SN+ + +++ + + +C
Sbjct: 644 NELKSLFSALLEETNLAVKYIEIVLNMVHTSETAKCISNNSKNILYKTTLFSSC 697
>11_04_0208 - 14871412-14872198,14872932-14873206,14873819-14873851
Length = 364
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = -2
Query: 587 EVLDLVQFHLGYVYRQQNRNSQVGRTVRITVRRSIWVQFDSASIFIGFIFAVWFTITEQF 408
EVL L++ HL + R +RN + ++R + + SASI G+ ++T +
Sbjct: 166 EVLGLIREHLTSIIRWVHRNGPKINRSTLRIKRMQFSRIYSASIMYGYFLK---SVTTRH 222
Query: 407 FFNAISAATSQF 372
I A + +F
Sbjct: 223 RLELILAQSQEF 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,438,244
Number of Sequences: 37544
Number of extensions: 434698
Number of successful extensions: 1350
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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