Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00937
(774 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 99 2e-21
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 7e-16
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 7e-15
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 48 1e-05
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 46 4e-05
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 8e-05
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 44 2e-04
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 43 3e-04
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 43 3e-04
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 43 3e-04
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 42 4e-04
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 42 4e-04
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 42 4e-04
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 42 4e-04
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 42 6e-04
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 42 6e-04
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 42 6e-04
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 41 0.001
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 39 0.004
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 39 0.005
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 38 0.007
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.012
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 37 0.016
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 37 0.021
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 36 0.036
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 36 0.036
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 36 0.048
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 35 0.064
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.064
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 35 0.084
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.084
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 34 0.11
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 34 0.15
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 34 0.15
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) 29 3.2
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 29 3.2
SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 29 4.2
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_42816| Best HMM Match : ATP-synt_8 (HMM E-Value=9.7) 28 9.6
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 99 bits (238), Expect = 2e-21
Identities = 41/82 (50%), Positives = 59/82 (71%)
Frame = +2
Query: 512 CVLPDCFCSADGTRIPGGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQI 691
C LP+CFCS G +PGG+ P ++PQM+ +TF+ A+N +Y++IFNG + NPNGC I
Sbjct: 574 CKLPNCFCS--GALVPGGLNPKEIPQMIMLTFDDAINGQVYPVYQKIFNGKK-NPNGCDI 630
Query: 692 KGTFFVSHKYTNYAAVQELHRK 757
+ TFFVSH+YT Y +Q L+ +
Sbjct: 631 RATFFVSHEYTQYQLLQALYHE 652
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 81.4 bits (192), Expect = 7e-16
Identities = 37/86 (43%), Positives = 52/86 (60%)
Frame = +2
Query: 509 QCVLPDCFCSADGTRIPGGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQ 688
+C P+C CS D + PGG+ P PQ++ ITF+ + V N + Y+ G NPNGC
Sbjct: 34 KCQPPNCRCS-DDFQPPGGLSPALTPQIIMITFDDDITVINYEQYKDAVKGFT-NPNGCP 91
Query: 689 IKGTFFVSHKYTNYAAVQELHRKGQK 766
I TFF+SH YTNY ++LH +G +
Sbjct: 92 ITATFFISHNYTNYYLAEKLHSEGHE 117
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 78.2 bits (184), Expect = 7e-15
Identities = 29/71 (40%), Positives = 48/71 (67%)
Frame = +2
Query: 545 GTRIPGGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNGNRHNPNGCQIKGTFFVSHKYT 724
G +P G++P Q+PQM+ +TF+ A+N+ Y+ + N + NPNGC ++ TFFVSH+YT
Sbjct: 1553 GASVPNGLDPKQIPQMIMLTFDDAINMQVFPFYQTLLNDTK-NPNGCNVRATFFVSHEYT 1611
Query: 725 NYAAVQELHRK 757
+Y + L+ +
Sbjct: 1612 DYQLLGTLYHE 1622
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 47.6 bits (108), Expect = 1e-05
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
CP K C G CI++ CNGK DC D SDE C
Sbjct: 4 CPGSKYECRDGTCIDRNEHCNGKIDCPDASDEKGC 38
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C K AC SG+CI+ C+G DCKD SDE+ C
Sbjct: 1155 CLSSKFACESGECIDVVGLCDGTDDCKDASDESRC 1189
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVEL 476
C + + C SG C++ L C+GK DC+D +DE C V++
Sbjct: 1193 CSKDEYQCVSGACVKWPLTCDGKKDCEDGTDEPGICGVQI 1232
Score = 35.5 bits (78), Expect = 0.048
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 330 LPILKTDEPICPEG--KLACGSGDCIEKELFCNGKPDCKDESDENAC 464
LP+ CP+ + C +G C+ ++L C+G C D SDE C
Sbjct: 1107 LPVHSVPGFRCPDKSTQFQCVNGQCVSRDLICDGDNACLDFSDEANC 1153
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 354 PICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTV 470
P C G+ CG G+C+ + L CNG+ DC+D SDE C +
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQDCGI 763
Score = 34.7 bits (76), Expect = 0.084
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = +3
Query: 357 ICPEGKLACGSG-----DCIEKELFCNGKPDCKDES-DENAC 464
+CP G CG+G CI K L CNG DC DE+ C
Sbjct: 1529 LCPSGYFYCGTGPKGEISCITKALRCNGIYDCSVTGWDEDGC 1570
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 44.8 bits (101), Expect = 8e-05
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNR 488
C + C +G CI+ C+G DC+D SDE C + L P R
Sbjct: 130 CDPSQHTCNNGQCIKASWLCDGASDCQDNSDEMNCPLTLAPGR 172
Score = 40.7 bits (91), Expect = 0.001
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
CP C + C+ C+G+ DC D SDE+ C
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDCGDRSDESGC 377
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 339 LKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDPN 509
L T + P C +G C+ KE C+G DC D SDE+ C P R P C P+
Sbjct: 294 LSTAKTCNPVTDHTCRNGRCVLKEWLCDGMDDCGDSSDEDNC-----PTRPPYTCPPS 346
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 264 RQTCDWKTNVKNCDQIEKPRKVLPILKTDEPI-CPEGKLACGSGD-CIEKELFCNGKPDC 437
R C ++ +NC + +P T P+ C + + C G+ C+ + C+G+ DC
Sbjct: 445 RSDCLDGSDEQNCQNVTRP--------TPPPVKCRKNERMCADGNGCVHRRWICDGERDC 496
Query: 438 KDESDENAC 464
D SDE C
Sbjct: 497 LDGSDEAGC 505
Score = 34.7 bits (76), Expect = 0.084
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + C G CI C+ + DC D SDE C
Sbjct: 383 CSANEFRCDDGRCITSTFRCDREFDCTDRSDERGC 417
Score = 32.3 bits (70), Expect = 0.45
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +3
Query: 357 ICPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 464
+CP CGS CI C+ P C DE C
Sbjct: 571 VCPRDHFRCGSSTICIANSKVCDATPHCPHGEDERNC 607
Score = 31.5 bits (68), Expect = 0.78
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +3
Query: 360 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP 494
C + C SG CI C+ + DC D SDE C P P
Sbjct: 422 CAPYEFTCAFSGRCIPGRFRCDHRSDCLDGSDEQNCQNVTRPTPPP 467
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPD 497
C + C + CI C+G +C D SDE C P + PD
Sbjct: 510 CSSDEFTCTNQKCIPLPQKCDGTDNCGDGSDEKMCPTPSVPPQ-PD 554
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 43.6 bits (98), Expect = 2e-04
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
CP C SG+CI C+GK DC D +DE C
Sbjct: 127 CPSNMFLCPSGECIMGTQLCDGKKDCTDNTDEKNC 161
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C G+ C +G CI K L+C+G C D SDE C
Sbjct: 91 CGSGEFQCDNGKCIRKNLYCDGDFACVDGSDETRC 125
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 345 TDEPICPEG--KLACGSGDCIEKELFCNGKPDCKDESDENAC 464
+DE C G + C SG+CIE FC+GK DC D DE C
Sbjct: 689 SDESGCTCGLHEFQCSSGECIEVATFCDGKKDCGDGFDETHC 730
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 333 PILKTDEPICPEGKLACGSGDCIEKELFCNGKPD-CKDESDENACTVEL 476
P++ C + C +G+C+ K CNG D C D SDE+ CT L
Sbjct: 650 PVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRDSCVDGSDESGCTCGL 698
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVEL-DPNRAPDC 500
CP K C +G CI K C+G+ DC D SDE + C+ + DP C
Sbjct: 47 CPPTKFLCANGMCIPKSAVCDGENDCGDMSDEPSNCSAHICDPKLEFQC 95
Score = 41.9 bits (94), Expect = 6e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENA 461
C + AC SG C+ K C+G DC D SDE++
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDCHDGSDESS 2201
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 360 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENA--CT 467
CP G+ C +G CI E C+G+ DC+D SDEN+ CT
Sbjct: 3086 CPAGQARCATGRRCIPSEWRCDGESDCEDGSDENSAQCT 3124
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +3
Query: 261 DRQTCDWKTNVKNCDQIEKPRKVLPILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCK 440
D C +++ V CD I+ R C + C SG CI ++ C+G DC
Sbjct: 3015 DNFRCVYRSRV--CDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCDGDNDCG 3072
Query: 441 DESDENA 461
D SDE A
Sbjct: 3073 DSSDEKA 3079
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 351 EPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
E CP + C +G C+ + C+G+ DC D SDE C
Sbjct: 2245 EVTCPAHEFTCPNGRCVSYDFLCDGEDDCGDFSDELRC 2282
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 357 IC-PEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
IC P+ + C +G CI K+ C+G DC D SDE+ C
Sbjct: 86 ICDPKLEFQCANGRCINKKWRCDGMKDCADGSDESTC 122
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 354 PICPEGKLACGSGDCIEKELFCNGKPDCKDESDEN 458
P C GK C +G CI C+G+ DC D SDE+
Sbjct: 823 PPCSAGKFTCKNGHCISLRWKCDGENDCVDNSDED 857
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
CP C SG CI C+G DC D SDE C
Sbjct: 2496 CPNHTFKCTSGHCIANSSVCDGDTDCADGSDEKDC 2530
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 500
C +G+ +C G CI + C+G DC D SDE P R C
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDCADASDEKGSGHRWCPQRLYQC 3253
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 360 CPEGKLACGSG-DCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNS 512
C + AC +G CI+++ C+G+ DC D SDE C +E N C S
Sbjct: 1087 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTS 1138
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE 455
C + AC +G CI L C+G DC D SDE
Sbjct: 2370 CTGAQFACDNGRCISTRLLCDGDNDCGDNSDE 2401
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 500
C + C +G CI +E C+ + DC D SDE C PN C
Sbjct: 2457 CDVTQFRCKTGTCITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKC 2503
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPN 509
C G +C +G CI + C+ + DC D SDE C P C PN
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDCGDNSDEARCPEVTCPAHEFTC-PN 2257
Score = 36.3 bits (80), Expect = 0.028
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C C +G C ++ C+G DC D SDE C
Sbjct: 910 CSASMFRCANGQCKPRDWVCDGFDDCGDGSDEKGC 944
Score = 35.5 bits (78), Expect = 0.048
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE 455
C + C SG+C+ C+G DC D+SDE
Sbjct: 2328 CNVSEFRCTSGECVPASWRCDGDNDCTDKSDE 2359
Score = 34.7 bits (76), Expect = 0.084
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + + C SG CI C+ DC D SDE C
Sbjct: 3168 CAKHQYRCASGRCISASWVCDHVNDCGDGSDEQQC 3202
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTV 470
C C + C+ + C+G DC+D SDE C V
Sbjct: 3007 CAPYHFRCDNFRCVYRSRVCDGIDDCRDGSDERNCHV 3043
Score = 32.7 bits (71), Expect = 0.34
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 339 LKTDEPICPEGKLACGSGD-CIEKELFCNGKPDCKDESDE 455
L+ C G++ CGS + CI C+G DC D DE
Sbjct: 2280 LRCPPTTCVPGQVKCGSKNLCIPSSWLCDGSDDCGDGWDE 2319
Score = 32.3 bits (70), Expect = 0.45
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCDPN 509
C C + CI + C+G+ DC D SDE ++C V + C N
Sbjct: 2926 CTNNDFMCDNYRCISRLWRCDGEDDCGDGSDEPDSCPVRVCKPGTYQCADN 2976
Score = 31.9 bits (69), Expect = 0.59
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE--NACTVELDPNRAPDCDPN 509
CP+ C + C+++ C+ DC D SDE C + N CD N
Sbjct: 3246 CPQRLYQCINHVCVDRRWLCDDMDDCGDYSDELRLLCRYSICRNSHFRCDNN 3297
Score = 31.5 bits (68), Expect = 0.78
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 396 CIEKELFCNGKPDCKDESDENAC 464
CI + C+G+ DC D SDE C
Sbjct: 3141 CIPNQWKCDGESDCNDGSDEKGC 3163
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = +3
Query: 345 TDEPICPEGKLA-----C-GSGDCIEKELFCNGKPDCKDESDENACTVELD 479
+DE C EG C G+ CI C+G DC D DE + ++LD
Sbjct: 117 SDESTCGEGTCRPDEWHCIGTSRCIPLSRVCDGTNDCGDNYDEGSHCLDLD 167
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 357 ICPEGKLACGSGDCIEKELFCNGKPDCKDESDE 455
IC C + CI K C+G C D+SDE
Sbjct: 3286 ICRNSHFRCDNNKCIPKWNVCDGVYHCTDKSDE 3318
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +3
Query: 360 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACT 467
C + C S CI C+ DC D SDE CT
Sbjct: 1047 CHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERNCT 1083
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 360 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDE 455
C + C + CI K C+G+ DC D SDE
Sbjct: 1127 CGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE 1159
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 360 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDEN 458
C + + +C S C+ C+G+ DC D SDE+
Sbjct: 2414 CTQSEYSCRSTSRCVPLAFVCDGENDCGDGSDES 2447
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + + C + C+ C+ DC D SDE C
Sbjct: 3330 CRKDQFKCLNRRCVPVRAVCDSNDDCGDISDELQC 3364
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +3
Query: 342 KTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
KT C G+ CG+G CI C+ DC D SDEN C
Sbjct: 182 KTLSGTCAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDENNC 222
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + C +G CI + C+ DC D SDE C
Sbjct: 227 CNPSQFKCDNGRCISSKWRCDHDNDCGDMSDERNC 261
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 42.7 bits (96), Expect = 3e-04
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
CP C SG+CI CN + DC D +DE C
Sbjct: 219 CPSNMFLCPSGECIPTTALCNNENDCSDNADERNC 253
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP--DCDPNSA 515
C E + C +G C+++ L C+G C D SDE C+ + P +C P +A
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGSDEKHCSCPSNMFLCPSGECIPTTA 236
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 42.7 bits (96), Expect = 3e-04
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + C +G+CI K C+G+ DC ++SDEN C
Sbjct: 747 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDENNC 781
Score = 38.7 bits (86), Expect = 0.005
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C E ++ CG+G C+ K C+ DC D +DE C
Sbjct: 667 CSENEITCGNGICVVKRWVCDQDDDCGDGTDELNC 701
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 357 ICPEGKLACGSG-DCIEKELFCNGKPDCKDESDE--NACTVELDPNRAP 494
IC +G+ CGS CI + C+G DC + +DE N E N P
Sbjct: 788 ICKDGEFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNGP 836
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 363 PEGKLACGSGDCIEKELFCNGKPDCKDESDE-NAC 464
P+ + C +G CI + C+ DC D SDE N+C
Sbjct: 628 PDTQFRCTNGRCIPRRWVCDKDDDCHDGSDERNSC 662
Score = 32.3 bits (70), Expect = 0.45
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = +3
Query: 300 CDQIEKPRKVLPILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
CDQ + L C + C CI C+G DC D SDE C
Sbjct: 686 CDQDDDCGDGTDELNCAPHTCRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC 740
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 396 CIEKELFCNGKPDCKDESDENAC 464
CI C+G+ DC D SDE C
Sbjct: 599 CIAATWKCDGEDDCGDNSDEINC 621
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 372 KLACGSGDCIEKELFCNGKPDCKDESDENACTVELD--PNRAPDCDPNS 512
+L C +G C +K +C+G+ DC D SDE C+ + P A C N+
Sbjct: 228 QLRCDNGRCEDKRWWCDGQDDCNDGSDEKNCSASANPTPTNAQGCKLNN 276
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNR 488
C C SG+CI +L C+ DC D SDE C V+ DP R
Sbjct: 704 CTPESYKCRSGECISLDLLCDFNKDCLDGSDEENCGVQ-DPGR 745
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 467
C G+ C S +CI L C+G DC D SDE CT
Sbjct: 23 CDPGQFECTSSECIPDVLKCDGSEDCADSSDEINCT 58
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +3
Query: 345 TDEPICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENAC 464
T +C + C GDCI C+G DC+ +DE C
Sbjct: 58 TKRSMCRVDQFECLIEGDCIPLSKHCDGTWDCQHGTDEMDC 98
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 354 PICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
P+C G+ C G CI+ C+ DC D SDEN C
Sbjct: 2091 PMCQYGQFRCARGSCIDTGRVCDFTDDCGDNSDENNC 2127
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +3
Query: 333 PILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
P T P C G+ C +G CI C+ K DC D SDE C
Sbjct: 2541 PPTSTPPPGCNSGEHRCSNGQCINAIQVCDFKKDCSDGSDEATC 2584
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 354 PICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
P CP G C G CI + L C+ + DC D DE +C
Sbjct: 2244 PPCPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDEASC 2280
Score = 37.5 bits (83), Expect = 0.012
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 369 GKLACGSGDCIEKELFCNGKPDCKDESDENACTV 470
G + C +G CI+K C+ DC D SDE C +
Sbjct: 3207 GYVKCTNGGCIQKSKLCDFTDDCGDNSDEGRCAL 3240
Score = 36.3 bits (80), Expect = 0.028
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 357 ICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 467
+C + C G C + C+ DC D SDE +C+
Sbjct: 3619 VCTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDERSCS 3655
Score = 32.3 bits (70), Expect = 0.45
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDC--KDESDENAC 464
C + C G CI K C+ + DC D SDE+ C
Sbjct: 4059 CNTDEFKCSRGGCIPKSYLCDYQADCMFNDLSDESKC 4095
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 467
C + C SG CI C+ + DC D S+E T
Sbjct: 2783 CSSNQFRCDSGHCISSSSKCDFETDCCDGSEERNST 2818
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 360 CPEGKLACGS-GDCIEKELFCNGKPDCKDESDENAC 464
C + C + G CI C+ DC D SDE +C
Sbjct: 3425 CNAQQFGCVTDGKCIPLTSVCDFNVDCLDGSDERSC 3460
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 41.9 bits (94), Expect = 6e-04
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + C G C+ FCNG+ DC D SDE +C
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSC 108
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 378 ACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP 494
AC G C+ L CNG DC+D SDE + D R P
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDEPKLCGKHDTMRPP 155
Score = 35.5 bits (78), Expect = 0.048
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPD 497
C + C +G C+ +E+ C+G C D SDE C + PD
Sbjct: 38 CHGDQFQCLNGMCVGQEVRCDGDYACVDHSDERNCACRSAEFKCPD 83
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 41.9 bits (94), Expect = 6e-04
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +3
Query: 345 TDEPICPEG-----KLACG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 500
+DE CP ++ C S C+ + L C+GKPDC D SDE C V NR C
Sbjct: 1333 SDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDEAHCRVRKSINRNVVC 1390
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 360 CPEGKLAC-GSGDCIEKELFCNGKPDCKDESDENAC 464
C + + C S CI+ C+G PDC D SDE+ C
Sbjct: 1303 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 1338
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Frame = +3
Query: 360 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC-------TVELDPNRAPDCD 503
C + C D CI C+G+ DC D DE C T L P DC+
Sbjct: 338 CQSNEFYCSKDDRCINIFWKCDGESDCTDGEDEQGCATTAPVITPSLGPPHPGDCN 393
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 360 CPEGKLAC-GSGDCIEKELFCNGKPDCKDESDEN 458
C ++ C SG C++++ C+ DC D +DE+
Sbjct: 120 CTANEVRCKNSGHCVQQQQVCDFTDDCGDGTDED 153
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 41.9 bits (94), Expect = 6e-04
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + C G C+ FCNG+ DC D SDE +C
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSC 108
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPD 497
C + C +G C+ +EL C+G C D SDE C + PD
Sbjct: 38 CHGDQFQCLNGMCVGQELRCDGDYACVDHSDERNCACRSAEFKCPD 83
Score = 36.7 bits (81), Expect = 0.021
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 378 ACGSGDCIEKELFCNGKPDCKDESDE 455
AC G C+ L CNG DC+D SDE
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDE 142
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE 455
C E + C SGDC+ C+G DC D SDE
Sbjct: 216 CSEEEFPCASGDCVPLTSVCDGSADCSDSSDE 247
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 264 RQTCDWKTNVKNCDQIEKPRKVLPILKTDEPICPEGKLACGSGD-CIEKELFCNGKPDCK 440
+ C + KNC + + P P+ +P C + C +G C+++ C+G DC
Sbjct: 66 KSDCSGGEDEKNCVKPQTPPPTPPL----KPKCRISQRRCDNGSGCVDRMKICDGMRDCA 121
Query: 441 DESDENAC 464
D SDE C
Sbjct: 122 DGSDERGC 129
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +3
Query: 357 ICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDP 506
+C + + CG S CI K C+GK DC DE C P P P
Sbjct: 42 VCRDDQFQCGTSRKCIRKSKICDGKSDCSGGEDEKNCVKPQTPPPTPPLKP 92
Score = 37.1 bits (82), Expect = 0.016
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 467
C + C +G CI + C+ + DC D SDE C+
Sbjct: 4 CSATEFRCNNGRCITRAFRCDDEDDCLDNSDEQGCS 39
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C G C +G CI L C+ DC DESDE C
Sbjct: 5 CKAGDFRCANGRCISGALVCDLDDDCGDESDERGC 39
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 396 CIEKELFCNGKPDCKDESDENACTVELDPNR 488
CI+ C+GKP+C D SDEN C ++P+R
Sbjct: 285 CIDISYKCDGKPECADHSDENDCPPLINPDR 315
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 348 DEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDEN 458
D P C SG CI + C+GK DC D SDE+
Sbjct: 355 DAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRSDES 391
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 360 CPEGKLACGSG-DCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNS 512
C + AC +G CI+++ C+G+ DC D SDE C +E N C S
Sbjct: 114 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTS 165
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +3
Query: 360 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACT 467
C + C S CI C+ DC D SDE CT
Sbjct: 74 CHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERNCT 110
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +3
Query: 360 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDE 455
C + C + CI K C+G+ DC D SDE
Sbjct: 154 CGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE 186
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 38.7 bits (86), Expect = 0.005
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 467
C G+ +C +G CI + C+ DC D SDE C+
Sbjct: 50 CNSGQFSCSNGRCISRSWVCDRDNDCGDGSDERNCS 85
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDP 482
C + +C +G C+ L C+G DC D SDE +C P
Sbjct: 103 CRSWEFSCLNGRCVFYRLVCDGVDDCGDSSDEMSCNATATP 143
Score = 37.1 bits (82), Expect = 0.016
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE 455
CP + C +G CI C+G DC D SDE
Sbjct: 10 CPSNRFRCNNGRCIPMSWRCDGDNDCGDMSDE 41
Score = 34.7 bits (76), Expect = 0.084
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP 494
C + C + C+ C+G+ DC D SDE C+ P P
Sbjct: 149 CHYWEFQCANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTCP 193
Score = 31.9 bits (69), Expect = 0.59
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +3
Query: 360 CPEGKLAC---GSGDCIEKELFCNGKPDCKDESDE 455
CP + C SG CI CNG+ DC D DE
Sbjct: 192 CPADWVRCFYNSSGLCISTSWLCNGRVDCPDAWDE 226
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 38.3 bits (85), Expect = 0.007
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + C + C++++ CN K DC D SDE C
Sbjct: 145 CLASQYVCANSKCVDRDQLCNFKDDCGDNSDELPC 179
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 339 LKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVE 473
L + E C K C + CI+ CN + DC+D SDE +C E
Sbjct: 385 LVSSEGPCGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDEISCPPE 429
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 348 DEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPN 485
D P C E + C +G CI+ + C+ +C D SDE C +PN
Sbjct: 1342 DCPPCKENQFRCDNGQCIDGDPRCDKYKNCTDGSDELGCAT-CEPN 1386
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 360 CPEGKLACGS--GDCIEKELFCNGKPDCKDESDENAC 464
C ++C S CI K C+G DC D+SDE C
Sbjct: 1307 CKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEEDC 1343
Score = 32.3 bits (70), Expect = 0.45
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C C +G CI C+ DC D SDE C
Sbjct: 1383 CEPNFFRCNTGKCISARWQCDQLDDCGDNSDEIGC 1417
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +3
Query: 345 TDEPICPEG-----KLACG-SGDCIEKELFCNGKPDCKDESDENACTVE 473
+DE CP ++ C S C+ + L C+GKPDC D SDE C E
Sbjct: 36 SDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDEAHCRGE 84
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 360 CPEGKLAC-GSGDCIEKELFCNGKPDCKDESDENAC 464
C + + C S CI+ C+G PDC D SDE+ C
Sbjct: 6 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 41
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 37.5 bits (83), Expect = 0.012
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE 455
C + C +G+CI K C+G+ DC ++SDE
Sbjct: 592 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDE 623
Score = 31.9 bits (69), Expect = 0.59
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + C CI C+G DC D SDE C
Sbjct: 551 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC 585
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 37.1 bits (82), Expect = 0.016
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 297 NCDQIEKPRKVLPILKTDEPICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTV 470
N IE+ + +L T + C EG+ AC + C+ K C+ DC D SDE C +
Sbjct: 68 NSKAIEEAKNILQE-STVKGGCAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 125
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 360 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 464
C + C +G CI + C+ DC D+ DE C
Sbjct: 23 CAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNC 58
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 36.7 bits (81), Expect = 0.021
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 467
C + C +G+CI + C+ DC D SDE AC+
Sbjct: 134 CGSTQFRCRNGNCINRNYVCDKDNDCGDGSDEVACS 169
Score = 35.9 bits (79), Expect = 0.036
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 357 ICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
+C + K C +G C+ + C+G DC+D +DE C
Sbjct: 98 VCSQFK--CNNGHCVHRNWKCDGSNDCRDGTDEVGC 131
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C G+ C + CI C+ DC D SDE+ C
Sbjct: 176 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 210
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 35.9 bits (79), Expect = 0.036
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 360 CPEGKLACGS-GDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCD 503
C C S G CI K C+G+ DC D SDE C ++ +C+
Sbjct: 90 CGSRHFKCVSDGKCIPKSWRCDGEMDCPDSSDEEGCVNRTCSSKEFNCN 138
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 35.9 bits (79), Expect = 0.036
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 360 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTV 470
C EG+ AC + C+ K C+ DC D SDE C +
Sbjct: 901 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 938
Score = 35.9 bits (79), Expect = 0.036
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +3
Query: 291 VKNCDQIEKPRKVLPILKTDEPI-CPEGKLACGSG-DCIEKELFCNGKPDCKDESDENAC 464
V +CD K PI + DE C K C +G C+ C+ DC D DE+ C
Sbjct: 924 VHDCDD-GSDEKNCPISRRDEEFGCGSDKFTCDNGAKCLPLTWLCDSITDCMDSKDEHNC 982
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 360 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 464
C + C +G CI + C+ DC D+ DE C
Sbjct: 836 CAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNC 871
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 35.9 bits (79), Expect = 0.036
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
CP + C + C+ + C+G DC D SDE C
Sbjct: 21 CPRHEFECENKLCVPRTWLCDGDNDCHDGSDEKNC 55
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDEN 458
C + CG+ CI + C+G DC D SDE+
Sbjct: 65 CGIEEFDCGNSTCIPLTVLCDGLYDCADRSDES 97
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 35.5 bits (78), Expect = 0.048
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + C SG CI C+G +C D SDE+ C
Sbjct: 209 CAPYEFQCTSGHCISGSSRCDGDYNCMDRSDEDGC 243
Score = 32.7 bits (71), Expect = 0.34
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C +L C SG C++ C+G DC+ DE C
Sbjct: 245 CFTNELTCSSGRCVQSINLCDGVRDCEYGLDELRC 279
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 35.1 bits (77), Expect = 0.064
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = +3
Query: 357 ICPEGKLACGSG-----DCIEKELFCNGKPDCKDES-DENAC 464
+CP G CG+G CI K L CNG DC DE+ C
Sbjct: 6 LCPSGYFYCGTGPKGEISCINKALRCNGIYDCSVTGWDEDGC 47
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 35.1 bits (77), Expect = 0.064
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 500
C +L C SG C+ C+G DC+ DE C + P + +C
Sbjct: 230 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRCGSSVCPLNSLNC 276
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + C SG CI C+ +C D SDE+ C
Sbjct: 194 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 228
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 34.7 bits (76), Expect = 0.084
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 381 CGSGDCIEKELFCNGKPDCKDESDENACT 467
C +G+CI + C+ DC D SDE AC+
Sbjct: 7 CRNGNCINRNYVCDKDNDCGDGSDEVACS 35
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C G+ C + CI C+ DC D SDE+ C
Sbjct: 42 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 76
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 34.7 bits (76), Expect = 0.084
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C +L C SG C+ C+G DC+ + DE C
Sbjct: 267 CFTNELTCSSGRCVPSINLCDGVKDCEQDLDELRC 301
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + C SG CI C+ +C D SDE+ C
Sbjct: 231 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 265
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C G+ C + CI + C+ DC D SDE C
Sbjct: 160 CGAGRYRCDNDRCIPRNWVCDRDNDCGDGSDETGC 194
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 381 CGSGDCIEKELFCNGKPDCKDESDENAC 464
C +G I + C+G+ DC+D SDE C
Sbjct: 88 CSNGHLIYRHWRCDGENDCRDGSDETGC 115
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + C +G C+ + C+ DC D SDE C
Sbjct: 118 CSSSQFRCRNGRCVSRSWVCDKDNDCGDGSDEVQC 152
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + C SG CI C+ +C D SDE+ C
Sbjct: 1104 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 1138
Score = 32.7 bits (71), Expect = 0.34
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C +L C SG C+ C+G DC+ DE C
Sbjct: 1140 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRC 1174
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 33.9 bits (74), Expect = 0.15
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 363 PEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 467
P+ C +G CI C+ + DC D SDE C+
Sbjct: 8 PDTSFKCDNGRCISATWVCDTENDCGDNSDEMNCS 42
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 354 PICPEGKLACGS-GDCIEKELFCNGKPDCKDESDE 455
P C G+ C S G CI + C+G DC+D DE
Sbjct: 209 PPCMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDE 243
>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 33.9 bits (74), Expect = 0.15
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 336 ILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVEL-DPNRAPDCDP 506
+ + D +C +G+ C G+C + +C+ +D + CTV +P + C P
Sbjct: 521 VYQPDNTVCDKGRRVCSVGECAKSICTKYALEECQCTADNDLCTVCCKEPGKDDTCTP 578
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C + C SG CI C+ +C D SDE+ C
Sbjct: 275 CASYEFQCTSGHCISGSSRCDSDYNCMDSSDEDGC 309
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 360 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 464
C +L C SG C+ C+G DC+ DE C
Sbjct: 311 CFTNELTCSSGRCVPSINLCDGVKDCEQGLDELRC 345
>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 2996
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 604 CNSNHLRYLIWFNSTWDTCTVSRTETVR*DALLGSQSGALFGSSSTVQ 461
CN N L Y+ +F+ T + + + D L+G+Q LFG+ T +
Sbjct: 451 CNKNQLSYIRYFDFTKND--IVSVQAGAFDNLVGTQCSILFGNDQTAE 496
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 381 CGSGDCIEKELFCNGKPDCKDESDENAC 464
C + + I+ + C+G DC D SDE+ C
Sbjct: 424 CDNDNYIQCQWKCDGTDDCGDHSDEDNC 451
>SB_53159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1540
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 543 SAEQKQSGRTHC*DHSQ--ALYLGPVRQCKHFHRIHLCSLVYHYRTILFQCN 394
+AE+++ G T C D + AL+LG + C + + + Y Y+ I CN
Sbjct: 1405 NAEKRRVGLTACCDVAAVPALHLGGIFPCCAYAHAYTYAYTYAYKMIADDCN 1456
>SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 77 DDDGAGDEPNADQLCDGRPADEYFRLTTEGPAAMSSGATRA*RTASPGSPQC 232
DDDG GD+ D CDG D F + ++ + T G P+C
Sbjct: 200 DDDGGGDD---DDACDGDDDDVSFMMACAVCVQIAKAYSSQHPTMRKGDPKC 248
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 381 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDC 500
CG+G E+ C G +C +++ C V+ P PDC
Sbjct: 2010 CGAGGKRERSRTCQGGSNCPGSANQVEMCDVQRCPLICPDC 2050
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 381 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDC 500
CG+G E+ C G +C +++ C V+ P PDC
Sbjct: 16 CGAGGKRERSRTCQGGSNCPGSANQVEMCDVQRCPLICPDC 56
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 551 RIPGGIEPNQVPQMVTITFNGAVNVDNIDLYEQIFNG 661
++ G +E + VT +NG N D D YE+ ++G
Sbjct: 641 KVSGWLETSVTSTSVTADWNGDSNADQEDYYEEAWDG 677
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 258 IDRQTCDWKTNVKNCD-QIEKPRKVLPILKTDEPIC 362
I + TCDW NV +CD + P P T +P C
Sbjct: 822 ITKTTCDWPRNV-DCDRKTPTPPSPTPPTTTPKPAC 856
>SB_42816| Best HMM Match : ATP-synt_8 (HMM E-Value=9.7)
Length = 261
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 533 RNSQVGRTVRITVRRSIWVQFDSASIFIGFIFAVWFTITEQ 411
+N+ GRT+R SI V S S+F G I ++ + T Q
Sbjct: 188 KNALHGRTIRRCTSSSIIVHSASTSLFFGIIISLIHSDTSQ 228
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,171,797
Number of Sequences: 59808
Number of extensions: 538273
Number of successful extensions: 1804
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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