Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00937
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    30   2.0  
At3g48060.1 68416.m05240 bromo-adjacent homology (BAH) domain-co...    29   4.5  

>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/48 (45%), Positives = 24/48 (50%)
 Frame = -3

Query: 454 SSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIGKTFRGFS 311
           SSDSSL       NNS S  SPLP +  P  +I SS    G  F G S
Sbjct: 18  SSDSSLNPSSEHGNNSSSSLSPLPSS--PPSRISSST---GTRFSGHS 60


>At3g48060.1 68416.m05240 bromo-adjacent homology (BAH)
            domain-containing protein contains Pfam profile PF01426:
            BAH domain
          Length = 1611

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = -1

Query: 312  LFDRNS*HSFSNHKFDGRYQGETAGAAH*GEPGDAVL*ALVAPDDIAAGPSVVRRKYSSA 133
            L D NS    S+H+ D  +Q     +   G   D  L      DD A  PS+V  ++S +
Sbjct: 1316 LTDMNSYTMNSSHRLDSSFQQVKLPST--GGRRDFDLNDGPVGDDAAVEPSMVLNQHSRS 1373

Query: 132  GLPS 121
            GLPS
Sbjct: 1374 GLPS 1377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,338,497
Number of Sequences: 28952
Number of extensions: 341704
Number of successful extensions: 985
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)