Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00936
         (760 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       24   1.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.5  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   3.5  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   3.5  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   3.5  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   3.5  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   3.5  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   3.5  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   3.5  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   3.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.6  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 340 CSCCSGWPGCACS 378
           C+C +GW G  CS
Sbjct: 130 CNCKNGWKGKTCS 142



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
 Frame = +1

Query: 316 SG*TCVGR-----CSCCSGWPGCACS 378
           +G TCV +     C C  GW G  C+
Sbjct: 79  NGGTCVDKINAFQCICKEGWEGALCN 104


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 380 GEHAQPGHPEQHEQRPTQVH 321
           G H Q  HP+ H+    Q H
Sbjct: 168 GHHMQEQHPQHHQPHHQQQH 187


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 415  HLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGS-SAYFSTSS 284
            H G+    + +PAS     T  +TN D++     G+ S+ F + S
Sbjct: 926  HAGSPCRNSASPASSDRSGTPRSTNGDRKPGGSLGALSSMFDSLS 970


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 380 GEHAQPGHPEQHEQRPTQVH 321
           G H Q  HP+ H+    Q H
Sbjct: 170 GHHMQEQHPQHHQPHHQQQH 189


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 352 SGWPGCACSPGLLQSLYALPSAARPNPGHGTNSVLWSDWSWSMP 483
           S +P    SP  +   Y     A P PGHG    +  D++   P
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTM-GDYTQLQP 78


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 352 SGWPGCACSPGLLQSLYALPSAARPNPGHGTNSVLWSDWSWSMP 483
           S +P    SP  +   Y     A P PGHG    +  D++   P
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTM-GDYTQLQP 78


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 352 SGWPGCACSPGLLQSLYALPSAARPNPGHGTNSVLWSDWSWSMP 483
           S +P    SP  +   Y     A P PGHG    +  D++   P
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTM-GDYTQLQP 78


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 352 SGWPGCACSPGLLQSLYALPSAARPNPGHGTNSVLWSDWSWSMP 483
           S +P    SP  +   Y     A P PGHG    +  D++   P
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTM-GDYTQLQP 78


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 352 SGWPGCACSPGLLQSLYALPSAARPNPGHGTNSVLWSDWSWSMP 483
           S +P    SP  +   Y     A P PGHG    +  D++   P
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTM-GDYTQLQP 78


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 352 SGWPGCACSPGLLQSLYALPSAARPNPGHGTNSVLWSDWSWSMP 483
           S +P    SP  +   Y     A P PGHG    +  D++   P
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTM-GDYTQLQP 78


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 352 SGWPGCACSPGLLQSLYALPSAARPNPGHGTNSVLWSDWSWSMP 483
           S +P    SP  +   Y     A P PGHG    +  D++   P
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTM-GDYTQLQP 78


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 352 SGWPGCACSPGLLQSLYALPSAARPNPGHGTNSVLWSDWSWSMP 483
           S +P    SP  +   Y     A P PGHG    +  D++   P
Sbjct: 36  STYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTM-GDYTQLQP 78


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 424 PNPGHGTNSVLWSDWSWSMPSNHK 495
           P  GH  +SV+W      +P N K
Sbjct: 533 PFAGHPVDSVVWERDGRQLPINRK 556


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,491
Number of Sequences: 336
Number of extensions: 3639
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)