Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00936
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 42 7e-05
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 34 0.019
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.10
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 28 1.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.2
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 27 3.8
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom... 26 5.1
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 5.1
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 6.7
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 26 6.7
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 26 6.7
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 8.9
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 8.9
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 8.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 8.9
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 25 8.9
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 42.3 bits (95), Expect = 7e-05
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +1
Query: 556 ADLRMLDKR-DTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQSENS-TEPYTDY 729
+D + +D R TL++ L + + +++++DL+ N+ H WF +S +S T P D+
Sbjct: 74 SDYKQIDSRYGTLEDLDRLMKALHERDMKLVMDLVLNHTSDQHEWFKESRSSKTNPKRDW 133
Query: 730 FIW 738
+ W
Sbjct: 134 YFW 136
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 637 RVIVDLIPNYVFTNHTWFVQSENSTEPYTDYFIWTKEQ 750
R I+D++ NY+F+ + V E E YTD+F KE+
Sbjct: 456 RAILDILNNYIFSCPLFLVTPEELEEQYTDFFKKLKEK 493
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 31.9 bits (69), Expect = 0.10
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = -1
Query: 490 GSTASTNSSP----TRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKF 323
G+ +ST+ +P TR SSY + S + + ++ +P+S S+++ ++ +S
Sbjct: 125 GTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSS 184
Query: 322 TQKGSSAYFSTS 287
+ K SS+ S+S
Sbjct: 185 SSKSSSSSSSSS 196
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 562 LRMLDKRDTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQSENSTE 714
L+ L+ ++ + K + N +KI ++ DL+P+ T WF E E
Sbjct: 122 LKSLESKNLVKSIKSVKNPTRKI--YMLYDLVPSTELTGGPWFTDQELDVE 170
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.2
Identities = 26/95 (27%), Positives = 46/95 (48%)
Frame = -1
Query: 508 SCCKSCGSTASTNSSPTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQR 329
S S S +ST SS ++ SS+ S + T+T+ + +S ++ ++++S
Sbjct: 347 SSSPSSSSFSSTTSS-SKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLS- 404
Query: 328 KFTQKGSSAYFSTSSLVIPVNCRLLHRVQSSRHHS 224
+ K SS+ S+S+ PV+ H SSR S
Sbjct: 405 --SHKSSSSSKSSSA---PVSSAFYHNSTSSRSSS 434
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = -1
Query: 481 ASTNSSPTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSA 302
++T S+P ++ L + + HS+ TQ T+S + F QK S A
Sbjct: 95 SNTFSAPLNATGNFSSANPASIDLAYLDLQKLLTLPDHSKETQEKTSSQRELFEQKSSVA 154
Query: 301 YFSTSSL 281
S ++
Sbjct: 155 SASKDNV 161
>SPCC306.06c |||ER membrane protein, BIG1 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 26.2 bits (55), Expect = 5.1
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = -1
Query: 409 GARTMTAIAPASMHSQATQNNTN--SDQRKFTQKGSSAYFSTSSLV--IPVNCRLLHRVQ 242
G++T A+ H T ++ + FT Y + + LV + ++CRLL +Q
Sbjct: 238 GSQTTLAMHQTRKHPVTDNGATGLFTEYQFFTPGLYMGYLALAVLVPTLFISCRLLSSIQ 297
Query: 241 SSRHHSCGPRR 209
S H PRR
Sbjct: 298 ISYHAFDSPRR 308
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 5.1
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 475 TNSS--PTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSA 302
+NSS PT PSS S T+TA S T T + T SS
Sbjct: 458 SNSSVIPTSAPSSVSSFTSSNSSY-TTTLTA-------SNTTVTFTGTGTGSATATSSSP 509
Query: 301 YFSTSSLVIP 272
Y+S SS+++P
Sbjct: 510 YYSNSSIIVP 519
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = -1
Query: 433 LGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVI 275
+G+G P + A+ P + S +T N+T S T ST + +
Sbjct: 150 VGNGNPSCVGIAVLAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITSTKASTV 202
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.7
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 345 VLFWVAWLCMLAGAIAVI 398
VL W AWLC +G + +
Sbjct: 278 VLIWFAWLCFNSGTLLTV 295
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 670 FTNHTWFVQSENSTEPYTDYFIWTKEQ 750
FT H W ++SE +E Y D W K++
Sbjct: 83 FTLHHWVLKSEVDSEAYED---WNKDE 106
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 255 NKRQFTGMTREEVLKYADDPFWVNLRWSLFVL 350
N G+TREE+ YA+ + WS++ +
Sbjct: 318 NNNPDDGLTREEMAPYAERVLVYPVNWSVYTM 349
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 514 FQSCCKSCGSTASTNSSPTRGPSSYHVLGSGGPHLGAR 401
F S GS ++ S+P+RG S + G G H G++
Sbjct: 910 FSSSGAGFGSGSNYKSAPSRGVSHHGHGGMSGSHRGSQ 947
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.4 bits (53), Expect = 8.9
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 409 PSAARPNPGH--GTNSVLWSDWSWSMPSNHKIYNRIGTAEDIQSSGRVRPSADLRMLDKR 582
PS R P H + V S +S SM + + +QSS + PS + L K+
Sbjct: 142 PSDVRAFPIHKNASTGVKRSFFSSSMSNGAMSPPSHSPSPFLQSSQHIPPSTPAQKLRKK 201
Query: 583 DTLDEFKI 606
+ D F+I
Sbjct: 202 NNFDSFRI 209
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Frame = -1
Query: 493 CGSTASTNSSPTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSD-QRKFTQ 317
C T N+S G + SGG +GA+ + + +N N +FT+
Sbjct: 180 CAKTLRNNNSSRHGKYLEMIFNSGGVPVGAKITNYLLEKNRIVNQVRNERNFHIFYQFTK 239
Query: 316 KGSSAYFSTSSLVIPVN 266
Y T + P N
Sbjct: 240 SAPQKYRDTYGIQGPEN 256
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 261 RQFTGMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIV 401
R + T EE + + +L W++ ++ W WL + A + +IV
Sbjct: 467 RVVSDSTNEETGQLIRETHDYSLGWTMTIVTWAIWLFLTALNLLLIV 513
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,634
Number of Sequences: 5004
Number of extensions: 58994
Number of successful extensions: 238
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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