Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00936
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 30 2.3
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 29 3.0
09_04_0092 + 14548110-14548306,14548891-14549029,14549698-145498... 29 4.0
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 29 4.0
08_02_1075 + 24149570-24149833,24150008-24150307 29 5.3
08_02_0523 + 18150425-18150629,18150822-18150881,18150882-181509... 29 5.3
11_02_0015 - 7355989-7357092 28 7.0
10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 28 7.0
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 28 7.0
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 28 9.3
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 28 9.3
01_01_0635 - 4795434-4795461,4795897-4797365 28 9.3
01_01_0077 - 585670-585787,585921-586687 28 9.3
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 738 PDEIISVGLSAVLTLYEPGMVGEHVVRDQINNHS 637
PDE ++ L ++L +Y+ G GE + D +NN S
Sbjct: 198 PDEKVASDLVSMLNVYKQGSDGELGINDTVNNGS 231
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = -1
Query: 487 STASTNSSPTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGS 308
S AS++S+ R P++ L + PH+ A +M A PA+ + T + F+ G
Sbjct: 652 SGASSSSAAPRAPAAPLALHAPAPHIRAPSMAAPPPAAPRGRTMPPTTG--RYSFSYGGL 709
Query: 307 SAYFST 290
S ++T
Sbjct: 710 SLSYTT 715
>09_04_0092 +
14548110-14548306,14548891-14549029,14549698-14549815,
14549901-14550127
Length = 226
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 364 GCACSPGLLQSLYALPSAARPNPGHG 441
G SPG+L LY + RP+PG G
Sbjct: 2 GVKPSPGVLDGLYGVQLGRRPSPGDG 27
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -3
Query: 461 DQRTEFVPCPGFGRAALGSAYNDCNSPGEHAQPGHPEQHEQRPTQVHPERI 309
D R + P G GR + Y P +H Q H QH+Q P H + +
Sbjct: 2 DPRARYPPGIGNGRGGNPNYYGRGPPPSQHQQ--HQHQHQQPPHPHHHQYV 50
>08_02_1075 + 24149570-24149833,24150008-24150307
Length = 187
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 111 LRFAEVRFGRPEFRNQLVND 52
LRFA V+FG PEF +ND
Sbjct: 60 LRFAIVKFGHPEFAGLALND 79
>08_02_0523 +
18150425-18150629,18150822-18150881,18150882-18150967,
18151802-18151948,18152712-18152835,18152990-18153366
Length = 332
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 328 CVGRC-SCCSGWPGCACSPGLLQSLYAL 408
C+ C +CC GW C P L++ +AL
Sbjct: 235 CLAGCRNCCYGWGVLDCLPASLEACFAL 262
>11_02_0015 - 7355989-7357092
Length = 367
Score = 28.3 bits (60), Expect = 7.0
Identities = 29/95 (30%), Positives = 35/95 (36%)
Frame = -1
Query: 469 SSPTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFST 290
SSP RG +S VL L AR A A + F G A+ S
Sbjct: 62 SSPCRGVASRDVLVHPPTRLRARLFYPSAAAGKDERPPPPRP-LPVIVFFHGGGFAFLSA 120
Query: 289 SSLVIPVNCRLLHRVQSSRHHSCGPRRHISHRTCP 185
+S CR + R S+ S RR HR CP
Sbjct: 121 ASAAYDAACRRIARYASAAVLSVDYRRAPEHR-CP 154
>10_08_0749 -
20282982-20283632,20284081-20284141,20284828-20284872,
20285293-20285672,20286382-20287050
Length = 601
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 368 QPGHPEQHEQRPTQVHPERIVSILQYLLSRH 276
Q G E H RP + PER VSIL+ L H
Sbjct: 316 QAGMLESHPWRPQRGLPERAVSILRAWLFEH 346
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -3
Query: 461 DQRTEFVPCPGFGRAALGSA-YNDCNSPGEHAQPGHPEQH 345
D +T + G G LGS+ + DC PG+ P H +H
Sbjct: 4700 DGQTSYPIRHGLGTTRLGSSIFIDCAMPGQPNMPRHQPRH 4739
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 490 HKIYNRIGTAEDIQSSGRVRPSADLRMLDKRDTLDE-FKILFNKIKKIGVR 639
HK Y + + I ++ PS L L K + E F I F ++KK GVR
Sbjct: 722 HKPYLKCLLVQVIANAFYYNPSLTLATLHKLGAVTEIFNIWFEQVKKSGVR 772
>02_01_0041 +
279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 409 GARTMTA-IAPASMHSQATQNNTNSDQRKFTQKGSSAYFST 290
G++++TA + + NT++ Q++ Q GSSA+ ST
Sbjct: 147 GSQSLTAEVTDQDFFGGTSDQNTDTQQQQLEQSGSSAFDST 187
>01_01_0635 - 4795434-4795461,4795897-4797365
Length = 498
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 348 LFWVAWLCMLAGAIAVIVRAP-KCGPPEPRTWYELGPLVGLELVDAVEPQDLQQDWNC*R 524
+ WV +L +AG I V P + PPEP WY PL ++ VD P D+ + C +
Sbjct: 282 MIWVDYL--VAGMIVAKVAHPGRVDPPEPVLWYV--PL-PVDPVDG-NPYDIDRGRGCPQ 335
Query: 525 HSK 533
S+
Sbjct: 336 ASR 338
>01_01_0077 - 585670-585787,585921-586687
Length = 294
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 378 AGAIAVIVRAPKCGPPEPR 434
AGA++++VR P PP+P+
Sbjct: 168 AGAVSIVVRDPSLPPPKPK 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,768,007
Number of Sequences: 37544
Number of extensions: 420148
Number of successful extensions: 1499
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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