Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00936
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 40 0.002
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 35 0.082
SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 0.19
SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24) 32 0.44
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0) 32 0.58
SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5) 31 0.77
SB_39385| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-28) 30 1.8
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39) 30 1.8
SB_42099| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23) 29 4.1
SB_1473| Best HMM Match : DUF551 (HMM E-Value=1.6) 29 4.1
SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42) 29 4.1
SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_55154| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 45.2 bits (102), Expect = 6e-05
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 586 TLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQS-ENSTEPYTDYFIW 738
T+++F+ L I G+++++D +PN+ H WF++S N P +++IW
Sbjct: 97 TMEDFESLLQDIHSRGMKLLLDFVPNHTSDQHDWFLESRSNRHNPRREWYIW 148
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +1
Query: 526 IQSSGRVRPSADLRMLDKR-DTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQSE 702
+ S G V DL+ ++ +++F+ L K +RVIVD +PN+ + WF +S
Sbjct: 684 VLSIGAVFSEEDLQDVNNALGKMEDFQNLLKKAHDRKMRVIVDFVPNHTSKKNKWFEESS 743
Query: 703 -NSTEPYTDYFIW 738
N T ++++W
Sbjct: 744 VNKTNSKRNWYVW 756
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 34.7 bits (76), Expect = 0.082
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 334 GRCSCCSGWPGCACSPGLLQSLYALPSAARP 426
GRCSC +GW G +C+ Y + ARP
Sbjct: 685 GRCSCGTGWTGPSCNASCSAGRYGINCVARP 715
>SB_5823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2324
Score = 26.6 bits (56), Expect(2) = 0.19
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 433 GHGTNSVLWSDWSWSMPS-NHKIYNRIGTAEDIQSSGRVRPSADL 564
G+GT++ SD +W+ S N +Y+ T SS R PSA++
Sbjct: 1143 GYGTSTAKTSDTTWTARSYNPSVYSE-PTKVTTASSSRQPPSAEV 1186
Score = 25.4 bits (53), Expect(2) = 0.19
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 361 PGCACSPGLLQSLYALPSAARPNPGHG 441
PGC+ +P Q+ A P P+P G
Sbjct: 1095 PGCSTAPTQTQATAANPDTGMPSPRFG 1121
>SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)
Length = 685
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 523 DIQSSGRVRPSADLRMLDK-RDTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHT 684
+I + G VR A+L++ D+ R+TL E + N I K + +IPN HT
Sbjct: 314 EIITPGLVRMQAELKLADQHRNTLSEQESKINSIAKSSSALSNSIIPNRYILRHT 368
>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1021
Score = 31.9 bits (69), Expect = 0.58
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -3
Query: 488 FDGIDQLQSDQRTEFVPCPGFGRAALGSAYNDCNSPGEHA-QPGHPEQHEQRPTQVHPER 312
F D+L S + + + LG YND N+ A P H H Q PT+ +
Sbjct: 933 FSSGDELDSGKGDSSIASSPYTSHTLGRRYNDHNNHSHTAFNPHHTMNHTQNPTRHNKYP 992
Query: 311 IVSI 300
+V+I
Sbjct: 993 VVTI 996
>SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)
Length = 262
Score = 31.5 bits (68), Expect = 0.77
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = -1
Query: 469 SSPTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFST 290
+SPT GP + L + +T I P H Q+ QNNTN ++ K ++K S ST
Sbjct: 202 TSPTIGPKHHQQLAQNITNNRPKTSPTIGP-KHHQQSAQNNTN-NRPKTSRKYMS--IST 257
Query: 289 SS 284
SS
Sbjct: 258 SS 259
>SB_39385| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-28)
Length = 360
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +1
Query: 532 SSGRVRPSADLRMLDKRDTLDEFKILFNKIKKIGVRVIVDLIPNYVFTNHTWFVQSENST 711
+ GR+ P A R R + F I+ + + +V PN F WF ++E+
Sbjct: 227 NQGRIAPMAPSRFAKNRKAVATFAIIASML-------VVTFTPNLFFA--VWFSKAESCE 277
Query: 712 EPYTDYFIWT 741
+ Y + IWT
Sbjct: 278 KGYHIFQIWT 287
>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
Length = 1060
Score = 30.3 bits (65), Expect = 1.8
Identities = 27/103 (26%), Positives = 43/103 (41%)
Frame = -1
Query: 577 CRAFVSRHLDEHALNFECLQQFQSCCKSCGSTASTNSSPTRGPSSYHVLGSGGPHLGART 398
CRAF+S HLD+ L + L S S S A ++ S + S+YH+ +
Sbjct: 594 CRAFLSSHLDQ--LQDKLLNSLAS--SSSASKAVSHLSTPQATSAYHL--TTPQTTSTHH 647
Query: 397 MTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPV 269
+T S H T T++ Q S+ + L+ P+
Sbjct: 648 ITTPQTTSTHHITTPETTSTHHISTPQTTSTHHSLHPKLLAPI 690
>SB_42099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 343 SCCSGWPGCACSPGLLQSLYALPSAARPNP 432
S C G PG C S+YA+ S +P P
Sbjct: 73 SACKGDPGIICGGPYRNSIYAVESTVKPPP 102
>SB_3454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = +1
Query: 337 RCSCCSGWPGCACSPG---LLQSLYALPSAARPNPGH 438
RC+C SGW G +C G + Y + NPG+
Sbjct: 68 RCNCMSGWQGLSCEVGCGSCHPNAYCMMDKCVCNPGY 104
>SB_22952| Best HMM Match : EGF_2 (HMM E-Value=2e-23)
Length = 300
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Frame = +1
Query: 334 GRCSCCSGWPG--CACSPG 384
G C C GW G C CSPG
Sbjct: 245 GTCQCKPGWTGIDCECSPG 263
>SB_1473| Best HMM Match : DUF551 (HMM E-Value=1.6)
Length = 917
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -1
Query: 535 NFECLQQFQSC-CKSCGSTASTNSSPTRGPSS 443
N CL+ C CK CG ST T PSS
Sbjct: 663 NIRCLESDYRCLCKDCGKPYSTCDCGTAAPSS 694
>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
Length = 618
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 285 EEVLKYADDPFWVNLRWSLF--VLFWVAWLCMLAGAIAVIVRA 407
E +LKY D+ W V F++A LC +AG +AV+ +A
Sbjct: 347 ECLLKYTDNVIGTFKYWFFIHSVFFFLAILCSIAGWVAVVSKA 389
>SB_56837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 334 GRCSCCSGWPGCACS 378
GRC C GW G ACS
Sbjct: 374 GRCDCKPGWYGSACS 388
>SB_55154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 508 SCCKSCGSTASTNSSPTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQR 329
SC S T++T+ PT+G ++HV G L R + H Q + + R
Sbjct: 151 SCSGSQYVTSNTSGKPTKGGCTFHVQGHSTSRLTHRKNQRRGGCTCHVQG-HSTSRLTHR 209
Query: 328 KFTQKG 311
K ++G
Sbjct: 210 KNQRRG 215
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -3
Query: 491 WFDGIDQLQSDQRTEFVPCPGFGRAALGSAYNDCNSPGEHAQPGHPEQHEQRPTQVHPER 312
W +G Q+D T+F P GR +Y++ P +QP E +V P
Sbjct: 1176 WIEGWRTYQTDDSTQFTESPTAGRCQ--RSYSEF-YPTTFSQPSSRESRSDMRVEV-PSA 1231
Query: 311 IVSILQ 294
+VS L+
Sbjct: 1232 LVSALK 1237
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 382 GLLQSLYALPSAARPNPGHGTNSVLWSDWSWSMPSNHKIYNRIGT 516
GLLQ L +PS++ N G T + L S + S K R+GT
Sbjct: 2173 GLLQGLTQIPSSSPTNLGRATPTPLTSTPNQSPDLKRKTSARMGT 2217
>SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 328 CV-GRCSCCSGWPGCACSPGLLQSLYALPSAARPNPGHGTNSVLWSDWSWSMPSNHKIY 501
C+ G C C +G+ G + +PSAA P + + D + P N+ IY
Sbjct: 563 CIHGHCKCRAGYIGTGYECMKAAIYHVIPSAAFARPAPPSPPQAYMDVLTASPQNYGIY 621
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,985,342
Number of Sequences: 59808
Number of extensions: 490857
Number of successful extensions: 2022
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2020
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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