Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00936
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical pr...    76   2e-14
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    51   8e-07
AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical ...    35   0.055
Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical pr...    32   0.38 
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    30   1.6  
EF445111-1|ABQ01578.1|  251|Caenorhabditis elegans scramblase 3 ...    29   2.7  
AF078785-2|AAC27093.1|  266|Caenorhabditis elegans Hypothetical ...    29   2.7  
AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    28   6.3  
Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.      28   8.3  
AF039716-8|AAB96738.1|  384|Caenorhabditis elegans Paf-acetylhyd...    28   8.3  
AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical ...    28   8.3  

>Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical
           protein F26D10.9a protein.
          Length = 613

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 29/58 (50%), Positives = 43/58 (74%)
 Frame = +3

Query: 273 GMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIVRAPKCGPPEPRTWYE 446
           G+T+E++ KY +DPFW  +R  LFVLFW+AW+ M AGAIA++V +PKC   +   W++
Sbjct: 43  GLTKEQLEKYRNDPFWKPVRTILFVLFWLAWVLMFAGAIAIVVLSPKCAEKQKPDWWQ 100


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 20/58 (34%), Positives = 35/58 (60%)
 Frame = +3

Query: 273 GMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIVRAPKCGPPEPRTWYE 446
           G++ +E+ ++ +DP W  +R  LFVLFW+ WL + A AI ++  +P C       W++
Sbjct: 78  GLSEQELEQFRNDPCWKFIRTVLFVLFWLIWLALFAVAILLVCFSPTCVLRAKPNWWQ 135


>AF068718-4|AAC17765.1|   98|Caenorhabditis elegans Hypothetical
           protein R01B10.3 protein.
          Length = 98

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 273 GMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIV 401
           G + +E+    ++P W   R++   +FW  W  +LAG+I +IV
Sbjct: 35  GYSLDELNAKREEPKWRVARYTAIAMFWGIWGALLAGSILIIV 77


>Z81050-6|CAB02856.1|  713|Caenorhabditis elegans Hypothetical
           protein C50B6.7 protein.
          Length = 713

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 571 LDKRDTLD-EFKILFNKIKKIGVRVIVDLIPNYV 669
           LD R   + EF+ + N+  K+GVR+IVD++ N++
Sbjct: 91  LDSRSGNEQEFQDMVNRCNKVGVRIIVDIVMNHM 124


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
            protein H43E16.1 protein.
          Length = 1203

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -1

Query: 496  SCGSTASTN--SSPTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKF 323
            S GST +    SS T G SS   + S   + G+ T    A  +  S +TQ N+N+     
Sbjct: 800  STGSTVTNQLASSSTYGASSTEPIASSTANPGSSTSGQTAVTTQGSSSTQTNSNTGSTGS 859

Query: 322  TQKGSSAYFSTS 287
            T        STS
Sbjct: 860  TVTNPPVSSSTS 871


>EF445111-1|ABQ01578.1|  251|Caenorhabditis elegans scramblase 3
           protein.
          Length = 251

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 595 RPVCHVCRAFVSRHLDEHALNFECLQQFQSCCKSCGSTASTNSSPTRGPS 446
           R  C   RAFV   +D        +++ + CC  C    STN S    PS
Sbjct: 91  RQCCGAERAFVMHIVDNFNKEVLTVKRERHCCGCCCWLGSTNKSTIESPS 140


>AF078785-2|AAC27093.1|  266|Caenorhabditis elegans Hypothetical
           protein C04E12.7 protein.
          Length = 266

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 595 RPVCHVCRAFVSRHLDEHALNFECLQQFQSCCKSCGSTASTNSSPTRGPS 446
           R  C   RAFV   +D        +++ + CC  C    STN S    PS
Sbjct: 91  RQCCGAERAFVMHIVDNFNKEVLTVKRERHCCGCCCWLGSTNKSTIESPS 140


>AL032641-4|CAA21647.1|  454|Caenorhabditis elegans Hypothetical
           protein Y5F2A.4 protein.
          Length = 454

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 589 VCHVCRAFVSRHLDEHALNFECLQQFQSCCKSCGS 485
           VC  C A  SR  D  +    CL++F   CK C S
Sbjct: 160 VCDECGASFSRPADLVSHETSCLKKFAFVCKPCDS 194


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -3

Query: 383 PGEHAQPGHPEQHEQR---PTQVHPER 312
           P +  QP HP QH+Q    P Q HP++
Sbjct: 520 PQQQQQPQHPHQHQQPASVPMQHHPQQ 546


>Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical
           protein T23F6.1 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 328 CVGRCSCCSGWPGCACSPGLLQSLYALPSAARP 426
           C G   CC G  GC C    +      PSA  P
Sbjct: 53  CGGMGGCCGGMSGCGCGSMGMCGQTCCPSAPPP 85


>AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 551 GRTRPEL*MSSAVPILL*IL--WFDGIDQLQSDQRTEFVPCPGFGRAAL 411
           G T P L M SA+ + L  L    DG+ +L+ ++ T F+    +GR  L
Sbjct: 334 GPTEPYLCMQSAIELTLSFLKDGKDGVQKLKDEKYTTFITNEIYGRVKL 382


>AF039716-8|AAB96738.1|  384|Caenorhabditis elegans
           Paf-acetylhydrolase protein 1 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 551 GRTRPEL*MSSAVPILL*IL--WFDGIDQLQSDQRTEFVPCPGFGRAAL 411
           G T P L M SA+ + L  L    DG+ +L+ ++ T F+    +GR  L
Sbjct: 334 GPTEPYLCMQSAIELTLSFLKDGKDGVQKLKDEKYTTFITNEIYGRVKL 382


>AF022978-3|AAG24182.2|  403|Caenorhabditis elegans Hypothetical
           protein T01G6.6 protein.
          Length = 403

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 586 CHVCRAFVSRH-LDEHALNFECLQQFQSC 503
           C  C AF  R  L+++A NF+CL+   +C
Sbjct: 26  CRACSAFFRRSILEKNAENFKCLRGNNTC 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,671,937
Number of Sequences: 27780
Number of extensions: 355795
Number of successful extensions: 1542
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)