Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00936
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa...    31   0.63 
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa...    30   1.5  
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g...    29   4.4  
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi...    28   5.9  
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,...    28   5.9  
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS...    28   7.7  
At2g18260.1 68415.m02129 syntaxin-related protein, putative (SYP...    28   7.7  
At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase cyc...    28   7.7  
At1g21320.1 68414.m02664 VQ motif-containing protein contains PF...    28   7.7  

>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 255

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 586 CHVCRAFVSRHLDEHALNFECLQQFQSCCKSCGSTASTNSSPTRGPSSYHVLGS 425
           C  C A +SR L EH    +CL   +  C  C     T+SSP +     H++ S
Sbjct: 124 CMKCNACMSRTLVEHVCREKCL---EDNCPICHEYIFTSSSPVKALPCGHLMHS 174


>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 195

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 586 CHVCRAFVSRHLDEHALNFECLQQFQSCCKSCGSTASTNSSPTRGPSSYHVLGS 425
           C  C A +SR + EH    +CL   +  C  C     T++SP +     HV+ S
Sbjct: 64  CMKCNACMSRLIVEHVCREKCL---EDNCPICHEYIFTSNSPVKALPCGHVMHS 114


>At1g69830.1 68414.m08034 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative similar to
           SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
           (1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
           alpha-amylase [Malus x domestica] GI:7532799; contains
           Pfam profile PF00128: Alpha amylase, catalytic domain
          Length = 887

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 559 DLRMLDKR-DTLDEFKILFNKIKKIGVRVIVDLIPNY 666
           DL  L+ R  T+DE K    K  K+G++V+ D + N+
Sbjct: 549 DLYNLNSRYGTIDELKDTVKKFHKVGIKVLGDAVLNH 585


>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
           enzyme, putative similar to isoamylase from [Solanum
           tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
           [Hordeum vulgare] GI:21314275, [Oryza sativa]
           GI:3252794; contains Pfam profiles PF00128: Alpha
           amylase catalytic domain, PF02922: Isoamylase N-terminal
           domain
          Length = 783

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 589 LDEFKILFNKIKKIGVRVIVDLIPNY 666
           ++EFKIL  +  K G+ VI+D++ N+
Sbjct: 315 INEFKILVKEAHKRGIEVIMDVVLNH 340


>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 1147

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +3

Query: 423 PEPRTWYELGPLVGLE-LVDAVEPQDLQQDWNC*RH----SKFRACSSKCRL 563
           P+P TW    P V ++ L D   P+ +Q D  C R+       R C+ K R+
Sbjct: 245 PQPLTWRTAHPYVLVDRLEDVTPPEKVQMDKKCDRNITVFGYLRGCNFKKRM 296


>At4g26090.1 68417.m03756 disease resistance protein RPS2
           (CC-NBS-LRR class), putative domain signature CC-NBS-LRR
           exists, suggestive of a disease resistance protein.
           identical to RPS2 (gi:13661831)
          Length = 909

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
 Frame = -2

Query: 705 VLTLYEPGMVGEHVVRDQINN------HSYSDLLNFVEQNFEFVQC 586
           ++ +Y PG VG+  +   INN      H Y D+L +V+ + EF +C
Sbjct: 177 IIGVYGPGGVGKTTLMQSINNELITKGHQY-DVLIWVQMSREFGEC 221


>At2g18260.1 68415.m02129 syntaxin-related protein, putative
           (SYP112) similar to SP|Q42374 Syntaxin-related protein
           KNOLLE (Syntaxin 111) (AtSYP111) {Arabidopsis thaliana}
          Length = 285

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +1

Query: 481 PSNH---KIYNRIGTAEDIQSSGRVRPSADLRMLDKRDTLDEFKILFNKIKKI 630
           PSN    K+ +  G+  D+  +  V+P  DL+  ++ + +++ K   N++ ++
Sbjct: 181 PSNEDMEKMISGSGSCSDLVKTFEVKPEMDLKTKERHEAVNDIKRSLNRLHQV 233


>At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 317

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 378 AGAIAVIVRAPKCGPPEPRTWYELGPLVGLELVDAVEP 491
           AG++ ++VR P   PP+ +     G LV  E V AV P
Sbjct: 192 AGSVGIVVRDPSKPPPKTKLVARNGKLVVEEEVIAVGP 229


>At1g21320.1 68414.m02664 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 235

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -3

Query: 374 HAQPGHPEQHEQRPTQVHPE----RIVSILQYLLSRHPS 270
           H QP  P+ H+Q P+Q  P      I ++   ++  HP+
Sbjct: 38  HPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIHTHPN 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,612,116
Number of Sequences: 28952
Number of extensions: 321970
Number of successful extensions: 1167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)