Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00935
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772...    31   1.2  
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718...    30   1.6  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    30   2.2  
01_06_0201 - 27477392-27479728                                         29   2.8  
12_02_0458 - 19244972-19245073,19245299-19245673,19245772-192458...    29   5.0  
08_02_0468 - 17505905-17506002,17506295-17506424,17506662-175067...    28   8.7  

>06_03_0723 +
           23875008-23875204,23875311-23875576,23877166-23877274,
           23877577-23878212,23878328-23878573,23878669-23878834,
           23878863-23879076,23879580-23880097,23880617-23880683,
           23882131-23882215,23882292-23882367,23882593-23882756,
           23883088-23883217,23883314-23883430,23883505-23883600,
           23883732-23884009,23886571-23886794,23886935-23887011,
           23887103-23887145,23887231-23887288,23888371-23888410,
           23888891-23889418
          Length = 1444

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 527 GGCRVQRDHTFRAGFVCNGARWFNIGVVRIKSV 429
           G CR + D TF+      GAR+FN G  ++  V
Sbjct: 177 GACRNEHDKTFKCNSKLIGARYFNNGYAKVIGV 209


>03_02_0295 +
           7178921-7179451,7180083-7180448,7181316-7181450,
           7181533-7181606,7181960-7181999,7182178-7182223,
           7182398-7182477,7182585-7182760,7182848-7182973,
           7183338-7183430,7184135-7184260,7184815-7184884,
           7185262-7185344,7186216-7186329,7186884-7186983,
           7187557-7187583
          Length = 728

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = -3

Query: 557 LSLNNDLRTIGGCRVQRDHTFRAGFVCNGARWFNIGVVRIKSVSYSCISVALNRATGRCG 378
           L  +NDL  +  C + +D+    G +C    WF +G        Y        +ATG  G
Sbjct: 505 LGHSNDLYILA-CNLVKDYPQNCGSICRALSWFAVGCYYYCIKKYDQARRYFGKATGLDG 563

Query: 377 VR*PA 363
              PA
Sbjct: 564 TFPPA 568


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 65  FPDTPNRITVAVG-DRFGDDDSTTPRLPIEANGDLELI 175
           F D P R T+A     FG DDS+ PRL  E N  L+ +
Sbjct: 661 FSDNPRRQTIAAAASLFGADDSSNPRLD-ELNKTLQAL 697


>01_06_0201 - 27477392-27479728
          Length = 778

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = +2

Query: 32  RPSFAGSRPIGFPDTPNRITVAVGDRFGDDDS---TTPRLPIEANGDLELIDRLSKLPVD 202
           R ++  SR IG  D     T + G      DS      RL I+ +G+L+L   L+K  V+
Sbjct: 206 RTNYNSSR-IGVLDNTGHFTSSDGLNIIASDSGLGINRRLTIDQDGNLKLYS-LNK--VE 261

Query: 203 KQPFWFINWQALEAHRKTHKLTCR 274
           K   W + W+A+  H   H L  R
Sbjct: 262 KS--WIVTWEAMPQHCDVHGLCGR 283


>12_02_0458 -
           19244972-19245073,19245299-19245673,19245772-19245878,
           19245971-19246014,19246110-19246254,19246348-19246486,
           19246855-19247091
          Length = 382

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 482 VCNGARWFNIGVVRIKSVSYSCISVALNRAT 390
           V   +RW  +G+V +  V +S  S A+N AT
Sbjct: 225 VFGSSRWLGLGMVLLAGVCFSLFSPAINLAT 255


>08_02_0468 -
           17505905-17506002,17506295-17506424,17506662-17506778,
           17506881-17506959,17507546-17507654,17507857-17507969,
           17510510-17510570,17511562-17511742,17512903-17512960,
           17514292-17514497,17514582-17514671,17514752-17514813,
           17514911-17514979,17515330-17515334,17516282-17516454
          Length = 516

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 613 NHENYYTFKTNPENMMRNVQRA 678
           NHE     + NPE   RNVQRA
Sbjct: 450 NHEAAAVLRDNPEKFERNVQRA 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,578,732
Number of Sequences: 37544
Number of extensions: 356414
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)