Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00935
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35417| Best HMM Match : DTHCT (HMM E-Value=1.7)                     28   6.7  
SB_47841| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                28   6.7  
SB_45842| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_35417| Best HMM Match : DTHCT (HMM E-Value=1.7)
          Length = 357

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 139 TSDRSERRLRVDR*TEQAACRQATLLVHQLASLRSAQEDPQTHVQRP 279
           TS+R  R LR+D+ +  A+C      + QL   RS Q  P++H  +P
Sbjct: 295 TSNRRARPLRLDQASSGASCLPKRHQL-QLQQPRSHQPQPRSHQPQP 340


>SB_47841| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 351

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 294 SHHAQSKRCYRPSKLKR 344
           +H A+S+RC+RPS  +R
Sbjct: 52  THQARSRRCFRPSSFRR 68


>SB_45842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +2

Query: 2   LTSSTLVLCQRPSFAGSRPIGFPDTPNRITVAVGDRFGDDDSTTPRLPIEANGDLELI 175
           +TSST+VL  + S   S    FP   NR ++ +G + GD+D    ++P+ +  +L  +
Sbjct: 81  VTSSTMVL--QASVVHSELYKFP---NRGSMPLGQQLGDNDQIEVKMPVMSFDNLNSV 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,857,568
Number of Sequences: 59808
Number of extensions: 430023
Number of successful extensions: 1070
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)