Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00935
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical ...    35   0.068
Z78416-8|CAB01683.2|  588|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z69717-4|CAA93533.2|  588|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z34800-4|CAA84323.2|  441|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U00064-6|AAB52703.1|  213|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AC025721-9|AAK29904.3|  639|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.5 protein.
          Length = 639

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 17/77 (22%), Positives = 39/77 (50%)
 Frame = +2

Query: 116 DDDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINWQALEAHRKTHKLTCRGLTDS*I 295
           +D++   +L  ++ G L+L+D  S LP  K+    + W+  +   K +K +   +++  +
Sbjct: 316 EDEAVVAQLLRDSKGSLKLVDTSSLLPELKRETGVVQWKVFDRDMKLYK-SLEDISEEKM 374

Query: 296 PSCPVKTLLPPKQTQTQ 346
               V +L PP + + +
Sbjct: 375 KKVIVSSLFPPTEQEAK 391


>Z78416-8|CAB01683.2|  588|Caenorhabditis elegans Hypothetical
           protein E01G6.3 protein.
          Length = 588

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 212 FWFINWQALEAHRKTHKLTCRGLTDS*IPSCPVKTLLPPKQTQTQCVSIEQR 367
           FWFIN  A +      K T  G + +  P  P   +LP K  ++    I  +
Sbjct: 495 FWFINMTAFDREVTRQKKTSNGTSLTWSPMHPGPVILPTKTNESSSFDISSQ 546


>Z69717-4|CAA93533.2|  588|Caenorhabditis elegans Hypothetical
           protein E01G6.3 protein.
          Length = 588

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 212 FWFINWQALEAHRKTHKLTCRGLTDS*IPSCPVKTLLPPKQTQTQCVSIEQR 367
           FWFIN  A +      K T  G + +  P  P   +LP K  ++    I  +
Sbjct: 495 FWFINMTAFDREVTRQKKTSNGTSLTWSPMHPGPVILPTKTNESSSFDISSQ 546


>Z34800-4|CAA84323.2|  441|Caenorhabditis elegans Hypothetical
           protein F45H7.4 protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +3

Query: 423 IGDRFDSDDTNVKPTSTVANKPG-AESMVTLNPTASN 530
           +GD  ++++    PTS+V+ +PG A+  V L+ ++SN
Sbjct: 316 LGDHSETEEDRSPPTSSVSQQPGSADEGVGLSASSSN 352


>U00064-6|AAB52703.1|  213|Caenorhabditis elegans Hypothetical
           protein ZC155.2 protein.
          Length = 213

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 68  PDTPNRITVAVGD-RFGDDDSTTPRLPI 148
           P+ PNR+T+  GD R   DD+ T R+ +
Sbjct: 15  PNVPNRVTIPDGDLRRNSDDTATDRISL 42


>AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical
           protein F55A3.3 protein.
          Length = 1030

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 162 SPFASIGSLGVVESSSPNLSPTATVIL 82
           SPFA +G  GV   S+  L PTA+ ++
Sbjct: 799 SPFAGLGFFGVPYRSATTLKPTASCLV 825


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,910,871
Number of Sequences: 27780
Number of extensions: 315555
Number of successful extensions: 877
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)